PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012570457.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | G2-like | ||||||||
Protein Properties | Length: 253aa MW: 29415.2 Da PI: 6.5034 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.8 | 2.4e-28 | 172 | 226 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k rlrWt+eLHe F+ v++LGG+e+A Pk+ile+m+++ Lt++hvkSHLQkYR+ XP_012570457.1 172 KRRLRWTKELHETFIMIVNRLGGPENAKPKAILEMMGLDVLTISHVKSHLQKYRS 226 68****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.228 | 169 | 229 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-26 | 170 | 227 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.94E-15 | 171 | 227 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-21 | 172 | 226 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.9E-8 | 174 | 225 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MSINQLESQH QIFEPYNIVT PLEDIPTIIH ESIANEAYMN FQSQQHHQHQ IDIPLWTNEF 60 SMTTTRDSPF LFCHDSKLVF ESLMSNSEGD DSFSSSEKCS EFHYCSHNKQ ICEHLSQQHK 120 KVLECDDPTD QKSHEVSFQK TQKESCTKQS SPCDLAFATP SNYDFEITEK GKRRLRWTKE 180 LHETFIMIVN RLGGPENAKP KAILEMMGLD VLTISHVKSH LQKYRSTFHT HKSLNGNLLL 240 YVVLFLFFRG KDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-18 | 171 | 226 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-18 | 171 | 226 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-18 | 171 | 226 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-18 | 171 | 226 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-18 | 171 | 226 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-18 | 171 | 226 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-18 | 171 | 226 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-18 | 171 | 226 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012570457.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012570457.2 | 1e-178 | myb family transcription factor PHL5-like | ||||
TrEMBL | A0A1S3E3T6 | 1e-177 | A0A1S3E3T6_CICAR; myb family transcription factor PHL5-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14490 | 10 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 4e-19 | G2-like family protein |