PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012570450.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 381aa    MW: 41935.3 Da    PI: 8.3733
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012570450.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.4e-12310355655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR +i +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  XP_012570450.1 310 SIAERVRRTKISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKNLQ 355
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.097304354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-16307371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.84E-12308357No hitNo description
Gene3DG3DSA:4.10.280.104.7E-15309367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-9310355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-11310360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MDSNTHQSYL LKQQNQPISG LLRFRSAPTS LLSNKDSNSS SSNHFWECSD NINSGSSSFQ  60
EFEENNNNNK TCSKELSEMN SSGYGGGLPP HYPRHGSGVT SSSAMNGSFG LGMEHETTHK  120
SFPSNLLRQG SSPASLFSNI SFQNGFAFMK GVGNYAEANG SNDELSPSIN RLNSQVSFPS  180
RNASSLGILS QITEIGSEDI EATSPDDGRE RSSNGDATHY GSGFPYSSWN DTQTFSENLS  240
GLKRGRSGNE KMFSDIQSGG FGNQVHTLSH HLSLPKTSSE MIAMEKLLQF SDSVPCKIRA  300
KRGCATHPRS IAERVRRTKI SERMRKLQEL VPNMDKQTNT ADMLDLAVDY IKNLQKQFKS  360
LSEKRASCKC MRMQKADTNQ I
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012570450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027188963.10.0transcription factor bHLH130
SwissprotQ66GR31e-100BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A3Q7XP700.0A0A3Q7XP70_CICAR; transcription factor bHLH130
STRINGXP_004497939.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51773253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-96bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]