PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012570178.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

HD-ZIP

Protein Properties

Length: 750aa MW: 82368.7 Da PI: 5.7693

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012570178.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.1	4.6e-21	55	110	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r +L+k+lgL+ +qVk+WFqNrR+++k XP_012570178.1 55 KKRYHRHTPNQIQELESFFKECPHPDEKQRLDLSKRLGLENKQVKFWFQNRRTQMK 110 688999***********************************************999 PP
2	START	171.5	5.5e-54	261	484	2	206
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-SEEEEEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke...qWdetlakaetlev 84 la++a++el+k+a+ ++p W ks +++n +e+ + f++ + + ea r+sg+v+ ++ l+e+l+d ++ ++ ++a+a l+v XP_012570178.1 261 LALAAMEELLKMAQTDSPIWIKSLdgerDILNHEEYARLFSSCVGskpngFVAEATRESGIVIINSLALMETLMDANRyadMFQSMIARAINLDV 355 6899**********************************66444899999**********************88888888888*** PP ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS START 85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl 172 +s g ga++lm aelq+lsplvp R + f+R+++q+ +g+w++vdvS++ + + ++++ +++lpSg+++++++ng+skvtw+eh+++ XP_012570178.1 356 LSGGiggtrnGAIHLMHAELQLLSPLVPvRHVRFLRFCKQHAEGVWAVVDVSIEIGHDAANGQPFISCRRLPSGCIVQDMPNGYSKVTWIEHWEY 450 **************************************************99999999***************************** PP -SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 173 kgrlphwllrslvksglaegaktwvatlqrqcek 206 +++++h+l+r+lv sg +ga +w atlqrqce+ XP_012570178.1 451 DESVVHQLYRPLVISGFGFGAHRWIATLQRQCEC 484 ******************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.05E-20	41	112	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-21	42	112	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.767	52	112	IPR001356	Homeobox domain
SMART	SM00389	4.3E-19	53	116	IPR001356	Homeobox domain
CDD	cd00086	6.55E-19	54	112	No hit	No description
Pfam	PF00046	1.6E-18	55	110	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	87	110	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	39.624	251	487	IPR002913	START domain
SuperFamily	SSF55961	1.87E-29	254	484	No hit	No description
CDD	cd08875	3.53E-114	255	483	No hit	No description
SMART	SM00234	4.7E-36	260	484	IPR002913	START domain
Pfam	PF01852	1.2E-45	261	484	IPR002913	START domain
SuperFamily	SSF55961	3.52E-22	512	744	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 750 aa Download sequence Send to blast
MEGQSEIGLT GESLDTNNMI GRMREDEYES RSGSDNFEGI SGDDQDAGDE QPKRKKRYHR 60 HTPNQIQELE SFFKECPHPD EKQRLDLSKR LGLENKQVKF WFQNRRTQMK TQLERHENIM 120 LRQENEKLRG ENTMMKEAMS NPVCNNCGGP AIPGQILFEE HQIRIENARL KDELNRICAL 180 TNKFLGKPIS SLASPMALQT SNSGLELGIG RNGMGGSSSL GASLPMGLDL GDSAMPGMRS 240 PMGLMGNSNE IQLERSVLID LALAAMEELL KMAQTDSPIW IKSLDGERDI LNHEEYARLF 300 SSCVGSKPNG FVAEATRESG IVIINSLALM ETLMDANRYA DMFQSMIARA INLDVLSGGI 360 GGTRNGAIHL MHAELQLLSP LVPVRHVRFL RFCKQHAEGV WAVVDVSIEI GHDAANGQPF 420 ISCRRLPSGC IVQDMPNGYS KVTWIEHWEY DESVVHQLYR PLVISGFGFG AHRWIATLQR 480 QCECLAILMS SSISTDDHTA LSQAGRRSML KLAQRMTSNF CSGVCASSAR KWDTLQMGTL 540 SDDMRVMTRK NVDDPGEPPG IVLSAATSVW MPVSRQRLFD FLRDERLRSE WDILSNGGPM 600 QEMVHIAKGQ GQGNCVSLLR ANAVNANDSS MLILQETWMD TSCSVVVYAP VDAQSLNVVM 660 SGGDSAYVAL LPSGFAILPD GNSSDYGASN GTLQKGGSIG SDGGGSLLTV GFQILVNSLP 720 TAKLTMESVD TVNNLISCTI QKIKAALRVA

Sequence ? help Back to Top

Protein Sequence Length: 750 aa Download sequence Send to blast

MEGQSEIGLT GESLDTNNMI GRMREDEYES RSGSDNFEGI SGDDQDAGDE QPKRKKRYHR  60
HTPNQIQELE SFFKECPHPD EKQRLDLSKR LGLENKQVKF WFQNRRTQMK TQLERHENIM  120
LRQENEKLRG ENTMMKEAMS NPVCNNCGGP AIPGQILFEE HQIRIENARL KDELNRICAL  180
TNKFLGKPIS SLASPMALQT SNSGLELGIG RNGMGGSSSL GASLPMGLDL GDSAMPGMRS  240
PMGLMGNSNE IQLERSVLID LALAAMEELL KMAQTDSPIW IKSLDGERDI LNHEEYARLF  300
SSCVGSKPNG FVAEATRESG IVIINSLALM ETLMDANRYA DMFQSMIARA INLDVLSGGI  360
GGTRNGAIHL MHAELQLLSP LVPVRHVRFL RFCKQHAEGV WAVVDVSIEI GHDAANGQPF  420
ISCRRLPSGC IVQDMPNGYS KVTWIEHWEY DESVVHQLYR PLVISGFGFG AHRWIATLQR  480
QCECLAILMS SSISTDDHTA LSQAGRRSML KLAQRMTSNF CSGVCASSAR KWDTLQMGTL  540
SDDMRVMTRK NVDDPGEPPG IVLSAATSVW MPVSRQRLFD FLRDERLRSE WDILSNGGPM  600
QEMVHIAKGQ GQGNCVSLLR ANAVNANDSS MLILQETWMD TSCSVVVYAP VDAQSLNVVM  660
SGGDSAYVAL LPSGFAILPD GNSSDYGASN GTLQKGGSIG SDGGGSLLTV GFQILVNSLP  720
TAKLTMESVD TVNNLISCTI QKIKAALRVA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012570178.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC149494	0.0	AC149494.4 Medicago truncatula clone mth2-116m7, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004496593.1	0.0	homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A1S2XYQ4	0.0	A0A1S2XYQ4_CICAR; homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
STRING	XP_004496593.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]