PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012570177.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 750aa MW: 82368.7 Da PI: 5.7693 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.1 | 4.6e-21 | 55 | 110 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r +L+k+lgL+ +qVk+WFqNrR+++k XP_012570177.1 55 KKRYHRHTPNQIQELESFFKECPHPDEKQRLDLSKRLGLENKQVKFWFQNRRTQMK 110 688999***********************************************999 PP | |||||||
2 | START | 171.5 | 5.5e-54 | 261 | 484 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-SEEEEEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke...qWdetlakaetlev 84 la++a++el+k+a+ ++p W ks +++n +e+ + f++ + + ea r+sg+v+ ++ l+e+l+d ++ ++ ++a+a l+v XP_012570177.1 261 LALAAMEELLKMAQTDSPIWIKSLdgerDILNHEEYARLFSSCVGskpngFVAEATRESGIVIINSLALMETLMDANRyadMFQSMIARAINLDV 355 6899************************************66444899999**************************88888888888******* PP ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS START 85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl 172 +s g ga++lm aelq+lsplvp R + f+R+++q+ +g+w++vdvS++ + + ++++ +++lpSg+++++++ng+skvtw+eh+++ XP_012570177.1 356 LSGGiggtrnGAIHLMHAELQLLSPLVPvRHVRFLRFCKQHAEGVWAVVDVSIEIGHDAANGQPFISCRRLPSGCIVQDMPNGYSKVTWIEHWEY 450 ******************************************************99999999********************************* PP -SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 173 kgrlphwllrslvksglaegaktwvatlqrqcek 206 +++++h+l+r+lv sg +ga +w atlqrqce+ XP_012570177.1 451 DESVVHQLYRPLVISGFGFGAHRWIATLQRQCEC 484 ********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.05E-20 | 41 | 112 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-21 | 42 | 112 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.767 | 52 | 112 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.3E-19 | 53 | 116 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.55E-19 | 54 | 112 | No hit | No description |
Pfam | PF00046 | 1.6E-18 | 55 | 110 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 87 | 110 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 39.624 | 251 | 487 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.87E-29 | 254 | 484 | No hit | No description |
CDD | cd08875 | 3.53E-114 | 255 | 483 | No hit | No description |
SMART | SM00234 | 4.7E-36 | 260 | 484 | IPR002913 | START domain |
Pfam | PF01852 | 1.2E-45 | 261 | 484 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.52E-22 | 512 | 744 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 750 aa Download sequence Send to blast |
MEGQSEIGLT GESLDTNNMI GRMREDEYES RSGSDNFEGI SGDDQDAGDE QPKRKKRYHR 60 HTPNQIQELE SFFKECPHPD EKQRLDLSKR LGLENKQVKF WFQNRRTQMK TQLERHENIM 120 LRQENEKLRG ENTMMKEAMS NPVCNNCGGP AIPGQILFEE HQIRIENARL KDELNRICAL 180 TNKFLGKPIS SLASPMALQT SNSGLELGIG RNGMGGSSSL GASLPMGLDL GDSAMPGMRS 240 PMGLMGNSNE IQLERSVLID LALAAMEELL KMAQTDSPIW IKSLDGERDI LNHEEYARLF 300 SSCVGSKPNG FVAEATRESG IVIINSLALM ETLMDANRYA DMFQSMIARA INLDVLSGGI 360 GGTRNGAIHL MHAELQLLSP LVPVRHVRFL RFCKQHAEGV WAVVDVSIEI GHDAANGQPF 420 ISCRRLPSGC IVQDMPNGYS KVTWIEHWEY DESVVHQLYR PLVISGFGFG AHRWIATLQR 480 QCECLAILMS SSISTDDHTA LSQAGRRSML KLAQRMTSNF CSGVCASSAR KWDTLQMGTL 540 SDDMRVMTRK NVDDPGEPPG IVLSAATSVW MPVSRQRLFD FLRDERLRSE WDILSNGGPM 600 QEMVHIAKGQ GQGNCVSLLR ANAVNANDSS MLILQETWMD TSCSVVVYAP VDAQSLNVVM 660 SGGDSAYVAL LPSGFAILPD GNSSDYGASN GTLQKGGSIG SDGGGSLLTV GFQILVNSLP 720 TAKLTMESVD TVNNLISCTI QKIKAALRVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012570177.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC149494 | 0.0 | AC149494.4 Medicago truncatula clone mth2-116m7, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004496593.1 | 0.0 | homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 | ||||
Swissprot | Q0WV12 | 0.0 | ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
TrEMBL | A0A1S2XYQ4 | 0.0 | A0A1S2XYQ4_CICAR; homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 | ||||
STRING | XP_004496593.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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