PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012570046.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C2H2 | ||||||||
Protein Properties | Length: 339aa MW: 38099.8 Da PI: 7.3579 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.0008 | 154 | 176 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H XP_012570046.1 154 YECKTCNRTFPSFQALGGHRASH 176 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 13 | 0.0003 | 227 | 249 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H XP_012570046.1 227 HECSICGSEFTSGQALGGHMRRH 249 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 3.1E-13 | 153 | 178 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.37E-9 | 153 | 176 | No hit | No description |
SMART | SM00355 | 0.052 | 154 | 176 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.637 | 154 | 181 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 156 | 176 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.37E-9 | 222 | 249 | No hit | No description |
Pfam | PF13912 | 8.1E-12 | 226 | 251 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.743 | 227 | 249 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.019 | 227 | 249 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 229 | 249 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
METPPEQQQQ QQQQVSLGSK EHTNIIKGKR TKRVRPQSPI PFSITANSST AEGDGEREDF 60 YNGDDVVNNN NNNNNTSPTT SYVTGLIQES SMIDEEHDMA NCLILLAQGQ SRELSSPKNT 120 TTEEDGGMNY TKYSSRKFME AASLDSGRAG YYVYECKTCN RTFPSFQALG GHRASHKKPK 180 ALPIAQDRKQ PFFDDEEFQF KTNNNHKSIS LQFNKGNVNN NNKSKVHECS ICGSEFTSGQ 240 ALGGHMRRHR APVGTSSANT TLSLTPMSLV HEDHARKRRN VLSLDLDLNL PAPEDDQRES 300 KFAFGNKQQQ QQQQHQQQQQ QQQQQSLVFS APALVDCHY |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00487 | DAP | Transfer from AT5G04390 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012570046.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010524 | 1e-51 | AP010524.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT34P16, TM1824, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012570046.1 | 0.0 | zinc finger protein ZAT5 | ||||
TrEMBL | A0A1S3E4S6 | 0.0 | A0A1S3E4S6_CICAR; zinc finger protein ZAT5 | ||||
STRING | XP_007144239.1 | 1e-128 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 6e-78 | C2H2 family protein |