PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012570032.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

G2-like

Protein Properties

Length: 285aa MW: 31632.1 Da PI: 6.572

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012570032.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.3	8.4e-34	33	87	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt++LH+rFv+av+qLGG+ kAtPk+i+++m+vkgLtl+h+kSHLQkYRl XP_012570032.1 33 KPRLRWTTDLHQRFVDAVTQLGGATKATPKAIMRTMNVKGLTLYHLKSHLQKYRL 87 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.5E-33	30	88	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.153	30	90	IPR017930	Myb domain
TIGRFAMs	TIGR01557	5.4E-24	33	88	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.33E-16	33	88	IPR009057	Homeodomain-like
Pfam	PF00249	6.2E-8	35	86	IPR001005	SANT/Myb domain
Pfam	PF14379	3.4E-13	131	176	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MFSRLIQHEG SVVSEDIHNH LADPCLVLTS DPKPRLRWTT DLHQRFVDAV TQLGGATKAT 60 PKAIMRTMNV KGLTLYHLKS HLQKYRLGKQ AGKDSEEGCK DGMSGSYLLE SPGTEHSSPK 120 LPVSDANEGH EVKEALRAQM EVQSKLHLLV EAEKHLQIRQ DAERRYMAML ERACKMLADQ 180 FIGDTITDTD IQKFEEVPSS EIGGMHVSEI PYILQPQGAN CSTESCLTSL ESLRGLTLEG 240 SPGGTKRMLG LDSMVAPLFW TETNIRTHGI HLAQVNPEGI TRYGM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	6e-19	33	89	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-19	33	89	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-19	33	89	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-19	33	89	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012570032.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT095107	1e-158	BT095107.1 Soybean clone JCVI-FLGm-19M17 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012570032.1	0.0	protein PHR1-LIKE 2-like isoform X1
Swissprot	Q94A57	2e-61	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A1S3E2M2	0.0	A0A1S3E2M2_CICAR; protein PHR1-LIKE 2-like isoform X1
STRING	XP_004496120.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6618	33	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	9e-63	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]