PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012569977.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MYB_related | ||||||||
Protein Properties | Length: 1107aa MW: 124568 Da PI: 9.5214 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.7 | 3.5e-10 | 45 | 81 | 3 | 41 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W++eE e++++a +++G++ Wk++a+ + +R+ +++ XP_012569977.1 45 QWSKEELEQFYEAYRKYGKD-WKKVAASVR-NRSIEMVE 81 6*****************99.*********.***98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.22E-11 | 40 | 89 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 10.446 | 41 | 94 | IPR017884 | SANT domain |
SMART | SM00717 | 9.3E-6 | 42 | 90 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-9 | 45 | 85 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.3E-6 | 45 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.23E-6 | 46 | 87 | No hit | No description |
SMART | SM01135 | 4.1E-55 | 613 | 714 | IPR033471 | DIRP domain |
Pfam | PF06584 | 3.7E-32 | 613 | 713 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1107 aa Download sequence Send to blast |
MAPPRKSRSV NKQFSTNDIS PEKDRVNSNK NKHRKKKLSD KLGSQWSKEE LEQFYEAYRK 60 YGKDWKKVAA SVRNRSIEMV EALYNMNRAY LSLPEGTASV VGLIAMMTDH YNVLEESDSE 120 RESNEASGSQ KPMKRKREKV QLSVSKDPVQ SQSVSSSDGC LSLLKKRRID GIQPRAVGKR 180 TPRVPVYHSY KQDDRENYVS PNKRSLKSTV DANDDEVAHV ALALTRAAQR GSSPLVSRTP 240 HRREEQKSSP VQSWERMNQM SKTARAKFRD VSVDEEFLEG SIESRGAENG EYVKDTGSLM 300 DMEGRGTGEV LRKGEKNYRK KERVKNVGNY QLDDGGEACS GTEEGLSFRS LNLKEKNMEV 360 INEKFEQFTP TSQRKRNKKL FFGDEIHALN ALQTLADLSL MMPTSIVESE SSVPLKGERM 420 TVDKDDKSAL PEATSTSHKR NKVKLCAVPG ADTSTSKKSK LGKDIANDTN ILSESKEQLP 480 FADRTWKRKQ KSMVSKAVDD DNKPVIKGKY TDQVFTSPKQ SKMIKPSVNS LGGDQKDLAV 540 STAEVPLLSE VSSPTKQRSR RKMIFQRPSM PKEKSSENVL KGQPNKYFTP MEKKLSSCLS 600 SSLVRRWFTF EWFYSALDYP WFAKREFVEY LNHVGLGNIP RLTRVEWSVI KSSLGKPRRF 660 SEHFLREERQ KLEQYRESVR KHYSELRAGV RDGLPTDLAK PLYVGQRVIA IHPKTREIHD 720 GSVLTVDHDK CRIQFDRPEL GVEFIMDIDC MPLNPLDNMP EALRRQFGAR KASFMTIEPH 780 INGSSSFVGC EMHASPAKGD ANHDVAQANI DNLCAQEACA PPCKVLQHQA KEADINALSE 840 LKRALDKKET LLIELRNANN GILENQNGIE CLKDSEAFKK HYATVSDTML QLRQRNTYPG 900 NSLPPWMKPK ANFEVHDDLP GVLLDSSLAQ ESGSTVIEII KGSRLRAHAM VDAASQAWSQ 960 ATKGGEDAIT RIWQSFNSID SQQLSSKYRL PVIRSQGQAN GSSYHHNQST YRASEPLSND 1020 ASGPKLHKDA DGDDIDIPSE LITSCLATLA MIQSCTERLY PPSDVARILD SAVTSLQPCC 1080 PQNLSIYREV QMCVGRIKTQ ILALIPT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012569977.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC151426 | 1e-110 | AC151426.32 Medicago truncatula clone mth2-6o22, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012569977.1 | 0.0 | protein ALWAYS EARLY 2 isoform X4 | ||||
TrEMBL | A0A1S3E2G6 | 0.0 | A0A1S3E2G6_CICAR; protein ALWAYS EARLY 2 isoform X4 | ||||
STRING | XP_004495722.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 0.0 | DNA binding |