PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012569900.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bHLH

Protein Properties

Length: 768aa MW: 86093.9 Da PI: 4.3611

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012569900.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.2	0.00034	585	621	13	54
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R++i +++ eLr ++P+ +K s + L ++++Y+ L XP_012569900.1 585 RQQIQDCIKELRGIIPHG-----GKCSIDSLLDRTIRYMLFL 621 89***************8.....7888888999999999877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	2.1E-14	53	135	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	10.575	572	621	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.28E-5	585	635	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 768 aa Download sequence Send to blast
MAMTMPLSLR NKLKTLCACG DGWSYAIFWR FHKTNPMLLT VEESYYEEQL GEEIAKLLPQ 60 VHLLGEGIVG EAAFSDKHNW LHSVSYEDDS GLYQQFSSGI KTIVVIPIKS WGVVQFGSTN 120 KILETINFLD QTQSLLKEID DMDMIEVSGN ELLPMDFANY DLNGLLASIS TENSCDWTLK 180 YTLDENYDEL REVYSSTNPN DPFSSQHKTC EETSSLSDQL NGTIEAYLDP DSSMNDNLIS 240 KTSLFGEWCG ENSSFDSLGQ QFASEIMAQE VVDVCTSFDS SIVHDSAFVS LDKGSSFQDN 300 HSSEPVVVTD VVLPSSSIEP VDMSEEFLKL SSLDDLCQWF APSTDDSICT TMIQLDNNLP 360 ESIEFNPTLA EHNTITTTVN SEMKETSVLI HSSENDFLDN LELDLGCDQS SEWWGNLLTP 420 MVSTATDIGF SECISELNYT TTLTDNRKRL FSELGGIEEL LKGQANYNNP FNSSNFENEL 480 LSSNKRQMVE FSSMSRTQVN FASLVGAEAG PNLMQSVSDL EKSNSVLTKK DTFPKLQVGM 540 LINDRNSINM KRGVSLHPKK QEEPTKPTKK KAKPGESTRP RPKDRQQIQD CIKELRGIIP 600 HGGKCSIDSL LDRTIRYMLF LRSVIKYADM IHEPNEPKLI EQANGVVPKD SENRGATWAF 660 EVGNQTMVCP IIVEDMNPPG QMLIEMLCED QGFFLEIVDI IKGFGLNILK AKMEIKKSKL 720 WGRFIVEANR HVTRIDVFWS LIHLLQQPNI TGSDSSNKHS NVIDANIA

Sequence ? help Back to Top

Protein Sequence Length: 768 aa Download sequence Send to blast

MAMTMPLSLR NKLKTLCACG DGWSYAIFWR FHKTNPMLLT VEESYYEEQL GEEIAKLLPQ  60
VHLLGEGIVG EAAFSDKHNW LHSVSYEDDS GLYQQFSSGI KTIVVIPIKS WGVVQFGSTN  120
KILETINFLD QTQSLLKEID DMDMIEVSGN ELLPMDFANY DLNGLLASIS TENSCDWTLK  180
YTLDENYDEL REVYSSTNPN DPFSSQHKTC EETSSLSDQL NGTIEAYLDP DSSMNDNLIS  240
KTSLFGEWCG ENSSFDSLGQ QFASEIMAQE VVDVCTSFDS SIVHDSAFVS LDKGSSFQDN  300
HSSEPVVVTD VVLPSSSIEP VDMSEEFLKL SSLDDLCQWF APSTDDSICT TMIQLDNNLP  360
ESIEFNPTLA EHNTITTTVN SEMKETSVLI HSSENDFLDN LELDLGCDQS SEWWGNLLTP  420
MVSTATDIGF SECISELNYT TTLTDNRKRL FSELGGIEEL LKGQANYNNP FNSSNFENEL  480
LSSNKRQMVE FSSMSRTQVN FASLVGAEAG PNLMQSVSDL EKSNSVLTKK DTFPKLQVGM  540
LINDRNSINM KRGVSLHPKK QEEPTKPTKK KAKPGESTRP RPKDRQQIQD CIKELRGIIP  600
HGGKCSIDSL LDRTIRYMLF LRSVIKYADM IHEPNEPKLI EQANGVVPKD SENRGATWAF  660
EVGNQTMVCP IIVEDMNPPG QMLIEMLCED QGFFLEIVDI IKGFGLNILK AKMEIKKSKL  720
WGRFIVEANR HVTRIDVFWS LIHLLQQPNI TGSDSSNKHS NVIDANIA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012569900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012569900.1	0.0	transcription factor bHLH157
TrEMBL	A0A1S3E2C5	0.0	A0A1S3E2C5_CICAR; transcription factor bHLH157
STRING	XP_004496010.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6955	16	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	2e-42	conserved peptide upstream open reading frame 7