PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012569869.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family TALE
Protein Properties Length: 262aa    MW: 29976.2 Da    PI: 6.2424
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012569869.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.52.2e-082042382155
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     + +yp +ee+ +L++ +gL+ +q+ +WF N+R ++
  XP_012569869.1 204 RWPYPMEEEKLQLSEMTGLDIKQINNWFINQRKRH 238
                     579*****************************885 PP
2ELK37.55.1e-13158179122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK++LlrKY+gyL+sL++EF+
  XP_012569869.1 158 ELKEMLLRKYGGYLSSLRKEFL 179
                     9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012556.4E-181458IPR005540KNOX1
PfamPF037905.0E-191656IPR005540KNOX1
SMARTSM012569.1E-2361112IPR005541KNOX2
PfamPF037912.3E-2364111IPR005541KNOX2
SMARTSM011885.0E-7158179IPR005539ELK domain
PfamPF037893.8E-10158179IPR005539ELK domain
PROSITE profilePS5121311.366158178IPR005539ELK domain
PROSITE profilePS5007111.969178241IPR001356Homeobox domain
SMARTSM003891.7E-10180245IPR001356Homeobox domain
SuperFamilySSF466895.13E-18180249IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-26183243IPR009057Homeodomain-like
CDDcd000861.95E-10190242No hitNo description
PfamPF059201.9E-16198237IPR008422Homeobox KN domain
PROSITE patternPS000270216239IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MMEVEPVDLS GLDRIIKNQI ATHPLYPNLL SAYIQCQQVG APTEIASLLE EIGRETHQPL  60
SLRQIGDDPD LDHFMESYCQ ILHKYKEELS KPFNEATIFL CNIESQLTQL CKGTITISSS  120
DFNNPASDHE ASEDEMSCVK VEGSVEGGHG TICSGNKELK EMLLRKYGGY LSSLRKEFLK  180
KRKKGKLPKD ARKTLMEWWN VHYRWPYPME EEKLQLSEMT GLDIKQINNW FINQRKRHWK  240
PSEDMRFAIM EGVSGTAGGG HL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173182LRKEFLKKRK
2179183KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012569869.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004495656.10.0homeobox protein knotted-1-like 1
RefseqXP_004495657.10.0homeobox protein knotted-1-like 1
RefseqXP_027189100.10.0homeobox protein knotted-1-like 1
SwissprotQ9FP292e-87KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A1S2XYH20.0A0A1S2XYH2_CICAR; homeobox protein knotted-1-like 1
STRINGXP_004495656.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70510.14e-77KNOTTED-like from Arabidopsis thaliana 2
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]