PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012569794.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | HSF | ||||||||
Protein Properties | Length: 356aa MW: 41598.2 Da PI: 5.8614 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 108.4 | 5.6e-34 | 42 | 133 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k++++++d ++++++sws+ g+sfvv+d+++f++ +Lp+yFkh+nf+SF+RQLn+YgF+k+++++ weF+++ F kg+++ll++ XP_012569794.1 42 FLTKTFDVVDDTTTNHIVSWSRGGTSFVVSDPHNFSNLLLPRYFKHNNFSSFIRQLNTYGFRKIDSDR---------WEFANEGFLKGQRHLLKN 127 9****************************************************************999.........****************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+rkk+ XP_012569794.1 128 IRRKKT 133 ****86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 7.3E-37 | 38 | 131 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.3E-57 | 38 | 131 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.58E-33 | 38 | 131 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.2E-30 | 42 | 131 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.1E-19 | 42 | 65 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.1E-19 | 80 | 92 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 81 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.1E-19 | 93 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MNYVYSVKEE YVEPLPLRNE YLPTIPPPLP MEELHEIGPP PFLTKTFDVV DDTTTNHIVS 60 WSRGGTSFVV SDPHNFSNLL LPRYFKHNNF SSFIRQLNTY GFRKIDSDRW EFANEGFLKG 120 QRHLLKNIRR KKTPSHTTSS QQGKSHSVEV SSFELDVEIN RLKKQKQVLM MELVSLRQQQ 180 YNTTLYLLEM EQKLRGIETK QKQMMSFLAR AMKNPAFIHQ LLQQKEKKKE LEETMAKKRR 240 LGIGQSSSEG EERRSSVVKV EPLELSDYEF GVSEMEMLAM EIQVFGRGEM DKEEIPETLE 300 SQESRDRVLD DEGFWEELMF SVKFEGIFGL PTAEDKNDSS EPLNQEFRIN SFHSVH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 8e-24 | 40 | 133 | 18 | 122 | Heat shock factor protein 1 |
5hdg_A | 7e-24 | 40 | 133 | 8 | 112 | Heat shock factor protein 1 |
5hdn_A | 7e-24 | 40 | 133 | 8 | 112 | Heat shock factor protein 1 |
5hdn_B | 7e-24 | 40 | 133 | 8 | 112 | Heat shock factor protein 1 |
5hdn_C | 7e-24 | 40 | 133 | 8 | 112 | Heat shock factor protein 1 |
5hdn_D | 7e-24 | 40 | 133 | 8 | 112 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012569794.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012569792.1 | 0.0 | heat stress transcription factor A-6b | ||||
Refseq | XP_012569793.1 | 0.0 | heat stress transcription factor A-6b | ||||
Refseq | XP_012569794.1 | 0.0 | heat stress transcription factor A-6b | ||||
Refseq | XP_027189538.1 | 0.0 | heat stress transcription factor A-6b | ||||
Refseq | XP_027189540.1 | 0.0 | heat stress transcription factor A-6b | ||||
Refseq | XP_027189541.1 | 0.0 | heat stress transcription factor A-6b | ||||
Refseq | XP_027189542.1 | 0.0 | heat stress transcription factor A-6b | ||||
Swissprot | Q9LUH8 | 1e-100 | HFA6B_ARATH; Heat stress transcription factor A-6b | ||||
TrEMBL | A0A1S3E1Y1 | 0.0 | A0A1S3E1Y1_CICAR; heat stress transcription factor A-6b | ||||
STRING | XP_004495165.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-86 | heat shock transcription factor A6B |