PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012569757.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MYB | ||||||||
Protein Properties | Length: 254aa MW: 29617.4 Da PI: 7.0193 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.1 | 2.4e-19 | 22 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd+ll+++vk++G g+W+++a+ g++R +k+c++rw +yl XP_012569757.1 22 KGPWTSEEDKLLIEYVKLHGEGRWNSVASLAGLRRNGKSCRLRWVNYL 69 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 32.9 | 1.5e-10 | 77 | 115 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 T++E+ +++++++ + W+tIar ++ gRt++++k++w+++ XP_012569757.1 77 QITPQEESIILELHA----R-WSTIARNLP-GRTDNEIKNYWRTH 115 557777777777765....6.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.843 | 17 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.96E-26 | 20 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-16 | 21 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-18 | 22 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-24 | 23 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.12E-11 | 24 | 69 | No hit | No description |
SMART | SM00717 | 1.4E-7 | 74 | 118 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 14.127 | 74 | 120 | IPR017930 | Myb domain |
Pfam | PF00249 | 4.2E-8 | 75 | 115 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-20 | 77 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.06E-8 | 79 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MYSGVIEGNT RWCVIEEDGW RKGPWTSEED KLLIEYVKLH GEGRWNSVAS LAGLRRNGKS 60 CRLRWVNYLR PDLKKGQITP QEESIILELH ARWSTIARNL PGRTDNEIKN YWRTHFKKKA 120 KKTADAADKT KKVSLRKQNQ QQIKQQQQIQ QQQQIQYNFD MKGILELLEE NEYSVPSTSQ 180 ETQEMVTMCP ETTEQHGYFY SMLNGNCNVY ADESSNEEIL WDGLWNLDDV LGNSMQLMLQ 240 AKPTNVHNLV TPFC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-24 | 22 | 120 | 7 | 108 | B-MYB |
1h8a_C | 1e-23 | 22 | 120 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012569757.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC144807 | 6e-87 | AC144807.23 Medicago truncatula clone mth2-9j13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004495255.1 | 1e-159 | transcription factor WER-like | ||||
TrEMBL | A0A1S2XVQ4 | 1e-157 | A0A1S2XVQ4_CICAR; transcription factor WER-like | ||||
STRING | XP_004495255.1 | 1e-158 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 2e-66 | myb domain protein 305 |