PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012569753.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 606aa    MW: 68161.2 Da    PI: 4.8432
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012569753.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.52.8e-14413459455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  XP_012569753.1 413 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYLKQLR 459
                     7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.0E-3812156IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.676409458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-19411478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-12413458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.49E-15413463No hitNo description
Gene3DG3DSA:4.10.280.107.0E-19413479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-17415464IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MSMAAPPVGN KLQNMLQAAV QSVQWTYSLF WQLCPQQLIL IWGDGYYNGA IKTRKTVQPM  60
EVSAEEASLQ RSQQLRELYE SLSAGETNPP TRRPCASLSP EDLTESEWFY LMCVSFSFPP  120
GVGLPGKAYT RRQHVWLTGA NEVDSKTFSR AILAKSEYST SNPTSSTDQI PTIMYTMADP  180
PSTNLNQDDM DEDDEEEEEE EDEDEESGSE DETGGRNRRA TSMTTGMTEP SELMQIEMPE  240
DIRVGSPNDG SNNLDSNFHL LAVSNQGNPP GQVESIQRWG PIEDPMGNSQ HLQLSSSVLH  300
QPLEELRQQD THYSQTVSNI LQNNSTQSPS INFITYSTHS SFTITNSTNH HFHAPPPDSA  360
TSQWLLKYIL FTVPYLHTKN HDETSPQTRD TTGTDPSSRL RTKGTPQDEL SANHVLAERR  420
RREKLNERFI ILRSLVPFVT KMDKASILGD TIEYLKQLRR KIQDLETRNR QIETEQQQTK  480
KNGVTVMVGP SEKKKMRIVE ECGATRAKAV EVVETVIVTS VQVSIIESDA LLEIECPQRE  540
GLLLDVMQML REMRIEVIGV QSSLNNNNGV FVAELRAKVK DNGNGKKVSI VEVKRALNQI  600
IPHANY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A1e-151015146188Transcription factor MYC3
4ywc_A1e-151015146188Transcription factor MYC3
4ywc_B1e-151015146188Transcription factor MYC3
5gnj_A7e-16413480875Transcription factor MYC2
5gnj_B7e-16413480875Transcription factor MYC2
5gnj_E7e-16413480875Transcription factor MYC2
5gnj_F7e-16413480875Transcription factor MYC2
5gnj_G7e-16413480875Transcription factor MYC2
5gnj_I7e-16413480875Transcription factor MYC2
5gnj_M7e-16413480875Transcription factor MYC2
5gnj_N7e-16413480875Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1417422ERRRRE
2418423RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012569753.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM1995651e-154KM199565.1 Trifolium repens isolate Tr_AN1 bHLH protein mRNA, complete cds.
GenBankKM8927771e-154KM892777.1 Medicago truncatula bHLH transcription factor (TT8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027189966.10.0basic helix-loop-helix protein A isoform X1
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A3Q7XZG80.0A0A3Q7XZG8_CICAR; basic helix-loop-helix protein A isoform X1
STRINGXP_004495293.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36373249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.12e-77bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]