PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_012569648.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 557aa MW: 63668.8 Da PI: 7.0376 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 44.6 | 3.7e-14 | 88 | 148 | 2 | 66 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 Wt++e laL ++r+ +++++ ++ W++vs+k++e gf++s+++Ckek+e+ n+ y k + XP_012569648.1 88 WTDEELLALFNIRSTIHNSFPDQ----LTWDHVSRKLAELGFKKSAEKCKEKFEDENRSYFKNID 148 ********************998....99*****************************9988766 PP | |||||||
2 | trihelix | 86 | 4.5e-27 | 396 | 492 | 1 | 85 |
trihelix 1 rWtkqevlaLiearr...........emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 rW+++evlaLi+++ + +++ +++ k+plWe++s+ m e g++r++k+Ckekwen+nk+++k+k+ +k+ +s +s+tcpyf+ XP_012569648.1 396 RWPRDEVLALINLKCissnnnnnveeKEGNNNNNNDNKGPLWERISQGMLELGYKRNAKRCKEKWENINKYFRKTKDVVSKKkRSLDSRTCPYFH 490 8************997777777655333333334569****************************************9888757*********** PP trihelix 84 ql 85 ql XP_012569648.1 491 QL 492 *9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2.6 | 84 | 142 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 5.854 | 86 | 140 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 2.0E-10 | 87 | 148 | No hit | No description |
PROSITE profile | PS50090 | 6.168 | 389 | 464 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.2 | 393 | 466 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 5.8E-16 | 395 | 492 | No hit | No description |
CDD | cd12203 | 1.28E-19 | 395 | 471 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 557 aa Download sequence Send to blast |
MLSRVGGGNS KVGKMLDGEA EEEYDSNLSV QYSISSSNNH ITFNPSTISH SHHQYQFLPH 60 LQTNLFPQIQ TQPPPPPPPP FIHSASAWTD EELLALFNIR STIHNSFPDQ LTWDHVSRKL 120 AELGFKKSAE KCKEKFEDEN RSYFKNIDSY RFVSELQGLY DQCHDDHGDV VTKDENSKDI 180 VMTKQCGDDD DDEKVILEKS KEIRKRKRRD RFEMFKCFCE SVVNNMMSQQ EQIHNKLLED 240 ILKRDEEKVA KEEAWKKQEM ERMNKELDIM AQEQAIANDR QANIIQFFNK YLNGNNKSSK 300 GCSSSSPSPP TQLHSQNPNY DLPSTRNNNN LESSTTPCSN SNIMIEENPS SSDNVVVVVP 360 LQQVPSSSSN NNNNPILESN STSTLVDSRM EDIKRRWPRD EVLALINLKC ISSNNNNNVE 420 EKEGNNNNNN DNKGPLWERI SQGMLELGYK RNAKRCKEKW ENINKYFRKT KDVVSKKKRS 480 LDSRTCPYFH QLSCLYNKQQ EKQGGGKLIS LHPNINSAHQ SSDSPVASGG MNNGCQPAQP 540 PVPSKDFPRN ISTFDRK |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 203 | 208 | RKRKRR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_012569648.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KT253130 | 2e-33 | KT253130.1 Chrysanthemum x morifolium trihelix protein (TH20) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004494687.1 | 0.0 | trihelix transcription factor GTL2-like | ||||
Refseq | XP_012569648.1 | 0.0 | trihelix transcription factor GTL2-like | ||||
Refseq | XP_027188489.1 | 0.0 | trihelix transcription factor GTL2-like | ||||
TrEMBL | A0A1S2XUK6 | 0.0 | A0A1S2XUK6_CICAR; trihelix transcription factor GTL2-like | ||||
STRING | XP_004494687.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G28300.1 | 3e-34 | Trihelix family protein |