PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012569639.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 256aa    MW: 29578.7 Da    PI: 9.8486
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012569639.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.2e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed ll ++++ +G g+W++ +++ g+ R++k+c++rw +yl
   XP_012569639.1 14 RGPWTPREDALLTKYIQAHGEGQWRSLPKRAGLLRCGKSCRLRWMNYL 61
                     89******************************99************97 PP

2Myb_DNA-binding49.11.3e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T++E++l+++ + + G++ W++Ia +++ gRt++++k++w+++l
   XP_012569639.1  67 RGNITPDEEDLIIRMHSLIGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
                      7999******************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.793961IPR017930Myb domain
SuperFamilySSF466891.72E-2911108IPR009057Homeodomain-like
SMARTSM007176.5E-131363IPR001005SANT/Myb domain
PfamPF002499.3E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-241568IPR009057Homeodomain-like
CDDcd001671.83E-91661No hitNo description
PROSITE profilePS5129424.90162116IPR017930Myb domain
SMARTSM007177.7E-1566114IPR001005SANT/Myb domain
PfamPF002493.3E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-2569117IPR009057Homeodomain-like
CDDcd001672.46E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGRAPCCSKV GLHRGPWTPR EDALLTKYIQ AHGEGQWRSL PKRAGLLRCG KSCRLRWMNY  60
LRPNIKRGNI TPDEEDLIIR MHSLIGNRWS LIAGRLPGRT DNEIKNYWNT HLIKKLKNQG  120
GITDPNTNNK LTDPAQESPM NKKKIKNKNK NKGKKKVLES EKKTLLYIPK PIRVKTLSSI  180
SASTTSQEEE QRTERIEENG VGKEGENDRF GLFFAEHHHE DLVTNSDMEC QSGFLEKLYE  240
EYLNLLKNEE NIHDNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141155KKKIKNKNKNKGKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012569639.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4345561e-63AB434556.1 Fagus crenata FcMYBS11 mRNA for transcription factor MYBS11, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012569639.10.0myb-related protein 308-like
SwissprotQ388502e-64MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A1S3E2P30.0A0A1S3E2P3_CICAR; myb-related protein 308-like
STRINGXP_007147330.11e-108(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-65myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]