PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012569576.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GATA
Protein Properties Length: 127aa    MW: 14192.8 Da    PI: 9.511
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012569576.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.5e-191851134
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                    Cs C+ttkTplWR gp+g+ktLCnaCG++yrk++
  XP_012569576.1 18 CSDCKTTKTPLWRGGPNGPKTLCNACGIRYRKRR 51
                    ********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.4E-151264IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.1E-141566IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577169.98E-131556No hitNo description
CDDcd002026.87E-141867No hitNo description
PROSITE patternPS0034401843IPR000679Zinc finger, GATA-type
PfamPF003204.8E-171851IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.7161848IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MGIMDQMDKE MSVIKKCCSD CKTTKTPLWR GGPNGPKTLC NACGIRYRKR RGCCNKKGQE  60
KERKRERAEN GVGGNDDLRV CLKMKLVALG EEVLLNSVMK KQRMIKLGEE EQAAVCLMAI  120
SCGFVFA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012569576.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012569576.11e-87GATA transcription factor 16-like isoform X2
SwissprotQ9FJ101e-30GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A1S3E3E92e-86A0A1S3E3E9_CICAR; GATA transcription factor 16-like isoform X2
STRINGXP_004494549.13e-84(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.18e-23GATA transcription factor 15
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]