PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012569530.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family B3
Protein Properties Length: 222aa    MW: 26047.1 Da    PI: 7.0705
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012569530.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3102.42.5e-3245146199
                     EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
                     f+k ltpsdv+k++rlv+pk++ae++   ++++ ++  l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F+++ r   ++
  XP_012569530.1  45 FEKPLTPSDVGKLNRLVIPKQHAERYfplDSEEIKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFHRH-RfCPKR 138
                     99**************************9777778999************************************************75.559999 PP

                     .EEEEE-S CS
              B3  92 lvvkvfrk 99 
                     ++++++r+
  XP_012569530.1 139 FFISWRRR 146
                     99999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-4037148IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-3142146IPR015300DNA-binding pseudobarrel domain
CDDcd100176.19E-2744134No hitNo description
PROSITE profilePS5086314.12845147IPR003340B3 DNA binding domain
SMARTSM010199.8E-2445147IPR003340B3 DNA binding domain
PfamPF023622.8E-2945147IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MSKTTLWWSQ EKQQDEEENE NENENDVVLE ETNTATQEEE KEAMFEKPLT PSDVGKLNRL  60
VIPKQHAERY FPLDSEEIKG LLLSFEDESG KCWRFRYSYW NSSQSYVLTK GWSRYVKDKR  120
LDAGDVVLFH RHRFCPKRFF ISWRRRNNSF STTPPAHLSD ANGNISLGWS TGFYPAHPYP  180
THHQTVSYHA GFYLSFFHVE GPKVRAQPHL VEIVRVRVLS GC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-49401463113B3 domain-containing transcription factor NGA1
5os9_B3e-49401463113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012569530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012569530.11e-168B3 domain-containing protein At2g36080-like isoform X2
TrEMBLA0A1S3E1A91e-166A0A1S3E1A9_CICAR; B3 domain-containing protein At2g36080-like isoform X2
STRINGXP_004494224.11e-141(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.27e-60B3 family protein