PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012569522.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WRKY
Protein Properties Length: 371aa    MW: 40891.7 Da    PI: 6.9623
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012569522.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.72.5e-33204262159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDg++WrKYGqK vk+s++prsYYrCt+a+C vkk+vers++d ++v++tYeg+H+h+
  XP_012569522.1 204 LDDGFRWRKYGQKAVKNSPYPRSYYRCTTASCGVKKRVERSSDDSSIVVTTYEGQHTHP 262
                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-34189264IPR003657WRKY domain
SuperFamilySSF1182901.7E-29196264IPR003657WRKY domain
PROSITE profilePS5081131.789199264IPR003657WRKY domain
SMARTSM007747.1E-40204263IPR003657WRKY domain
PfamPF031068.1E-27205262IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MEEEKREVHT HTHTNPTNSS STTTMTFSDE IPSISTTTTN TNNNNTSLFP FQPSISTIFD  60
TLPSSSCDQK ASSYGFIDLL GTHDYNNNNF LLSDWVTIPT TTATINHRLP SPVSSNIPDS  120
SEVSNTPASP NSCSISSSSN EATVNNTIEQ HRGKLSGNEQ ETELQGDDQH QHKTHKQLKA  180
KKKNEKKQRE PRFAFMTKSE IDHLDDGFRW RKYGQKAVKN SPYPRSYYRC TTASCGVKKR  240
VERSSDDSSI VVTTYEGQHT HPSPATSRSS FGFGTGFGGG AFLASGSHSQ FVLPRTHNAV  300
LPPHAPTLYN YTNITTTPPL SSLPGSTGSY VNTSSFDGFG SINDALLRDN GLLQDIIQMK  360
KEEIKDSINE H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-261972651078Probable WRKY transcription factor 4
2lex_A4e-261972651078Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012569522.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012569522.10.0WRKY transcription factor 23-like
SwissprotO229002e-56WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A1S3E1730.0A0A1S3E173_CICAR; WRKY transcription factor 23-like
STRINGXP_004486582.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.12e-48WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]