PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012569161.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

BES1

Protein Properties

Length: 703aa MW: 78585.3 Da PI: 5.2616

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012569161.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	146.9	1.7e-45	79	218	1	133
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl.eeaeaagssasaspe 91 gg++r+++ +E+E++k+RERrRRai+a+i+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++ +g+ p ++ ++ ss+s p+ XP_012569161.1 79 GGTRRSRPVEEKERTKLRERRRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPsrsQGQMPAgGNSTVVTSSSSHVPS 173 5899***************************************************************97667777776444444444443333 PP DUF822 92 sslq...sslkssalaspvesysaspksssfpspssldsislasa 133 + ++ ++s +sp+e +++ k + +psps +d s++ + XP_012569161.1 174 QQPPsvsLKGVASGYRSPLEYSACPSKGVFIPSPSPYDLSSSSRS 218 222221255568899*********************9877644 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	2.4E-39	80	214	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	2.5E-183	260	699	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	4.4E-198	263	697	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	1.0E-103	269	689	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.4E-67	300	314	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.4E-67	321	339	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.4E-67	343	364	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	1.7E-6	426	435	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00750	4.4E-67	436	458	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.4E-67	509	528	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.4E-67	543	559	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.4E-67	560	571	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.4E-67	578	601	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.4E-67	618	640	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	1.7E-6	669	683	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00842	1.7E-6	684	698	IPR001371	Glycoside hydrolase, family 14B, plant

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 703 aa Download sequence Send to blast
MATDMQRLVG MSEDDEEEMG MGVKDEDDED DDYEENGGEH GNVSGMVEID GGSGIGTAAG 60 DNSFQQHHQF QEQVGTPGGG TRRSRPVEEK ERTKLRERRR RAITARILAG LRRHGNYNLR 120 VRADINDVIA ALAREAGWVV LPDGTTFPSR SQGQMPAGGN STVVTSSSSH VPSQQPPSVS 180 LKGVASGYRS PLEYSACPSK GVFIPSPSPY DLSSSSRSQT SMLGDGEVQR DNPPVIGGSI 240 DTINETQIGD IPPRLPERNF AGTPYVPVYV MLPLGVINIK CELVDPDALL KQLRVLKSAN 300 VDGVMVDCWW GIVEAHAPQE YNWNGYKRLF QMLRELKLKL QVVMSFHECG GNFGDDVCIP 360 LPHWVAEIGR SNPDIFFTDR EGRHNPECLS WGIDKERVLR GRTAVEVYFD FMRSFRVEFD 420 QFFEDGFISM IEVGLGPCGE LRYPSCTVKH GWRYPGIGEF QCYDQYMLKS LRKAAEARGH 480 TIWARGPDNV GTYNSQPHET GFFCDGGDYD GFYGRFFLNW YSQVLVDHGN RVLSLAKLAF 540 EGSCIAAKLS GIYWWYKTAS HAAELTAGYY NPCNRDGYAA IMEMLKRNGV SLNIACVDPH 600 SLNQHEGFSE PFADPERLVW QVLNAGWDVG LPVISENALP CLNRVSYNKI LDNTKPVSDP 660 DGRHFSSFTY LRLSSLLMER QNFTEFERFV KRMHGEAVLD LQL

Sequence ? help Back to Top

Protein Sequence Length: 703 aa Download sequence Send to blast

MATDMQRLVG MSEDDEEEMG MGVKDEDDED DDYEENGGEH GNVSGMVEID GGSGIGTAAG  60
DNSFQQHHQF QEQVGTPGGG TRRSRPVEEK ERTKLRERRR RAITARILAG LRRHGNYNLR  120
VRADINDVIA ALAREAGWVV LPDGTTFPSR SQGQMPAGGN STVVTSSSSH VPSQQPPSVS  180
LKGVASGYRS PLEYSACPSK GVFIPSPSPY DLSSSSRSQT SMLGDGEVQR DNPPVIGGSI  240
DTINETQIGD IPPRLPERNF AGTPYVPVYV MLPLGVINIK CELVDPDALL KQLRVLKSAN  300
VDGVMVDCWW GIVEAHAPQE YNWNGYKRLF QMLRELKLKL QVVMSFHECG GNFGDDVCIP  360
LPHWVAEIGR SNPDIFFTDR EGRHNPECLS WGIDKERVLR GRTAVEVYFD FMRSFRVEFD  420
QFFEDGFISM IEVGLGPCGE LRYPSCTVKH GWRYPGIGEF QCYDQYMLKS LRKAAEARGH  480
TIWARGPDNV GTYNSQPHET GFFCDGGDYD GFYGRFFLNW YSQVLVDHGN RVLSLAKLAF  540
EGSCIAAKLS GIYWWYKTAS HAAELTAGYY NPCNRDGYAA IMEMLKRNGV SLNIACVDPH  600
SLNQHEGFSE PFADPERLVW QVLNAGWDVG LPVISENALP CLNRVSYNKI LDNTKPVSDP  660
DGRHFSSFTY LRLSSLLMER QNFTEFERFV KRMHGEAVLD LQL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wds_A	1e-146	265	696	11	444	Beta-amylase
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012569161.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004492727.1	0.0	beta-amylase 7 isoform X1
Refseq	XP_012569161.1	0.0	beta-amylase 7 isoform X1
Swissprot	O80831	0.0	BAM7_ARATH; Beta-amylase 7
TrEMBL	A0A1S3E270	0.0	A0A1S3E270_CICAR; Beta-amylase
STRING	XP_004492727.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	0.0	beta-amylase 7

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]