PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012569151.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C3H | ||||||||
Protein Properties | Length: 421aa MW: 46454.6 Da PI: 8.1222 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.7 | 1.5e-11 | 31 | 57 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p XP_012569151.1 31 PGEPDCSYYIRTGLCRFGATCRFNHPP 57 5789*********************97 PP | |||||||
2 | zf-CCCH | 39.8 | 7.6e-13 | 77 | 102 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++C+F+H++ XP_012569151.1 77 GQPECQYYLKTGTCKFGATCRFHHPK 102 5799********************96 PP | |||||||
3 | zf-CCCH | 31.1 | 4.1e-10 | 124 | 148 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+ ++CkF+H++ XP_012569151.1 124 ESECAYYLRTGQCKFANTCKFHHPQ 148 679********************97 PP | |||||||
4 | zf-CCCH | 38.6 | 1.8e-12 | 283 | 308 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ C+F+H++ XP_012569151.1 283 DQPECQFYMKTGDCKFGAVCRFHHPR 308 689*********************96 PP | |||||||
5 | zf-CCCH | 38.1 | 2.5e-12 | 328 | 354 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ XP_012569151.1 328 PGEPLCVFYSRYGICKFGPSCKFDHPM 354 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.2E-4 | 30 | 57 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.976 | 31 | 58 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.2E-8 | 32 | 57 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-5 | 35 | 58 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.9E-4 | 36 | 56 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.0E-6 | 75 | 102 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.488 | 75 | 103 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-10 | 78 | 102 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-6 | 79 | 104 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-4 | 81 | 101 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0022 | 121 | 148 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 121 | 149 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.14E-5 | 122 | 149 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.4E-7 | 124 | 148 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.624 | 281 | 309 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.0E-5 | 281 | 308 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.9E-9 | 283 | 308 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 284 | 309 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-4 | 287 | 309 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-7 | 327 | 354 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.821 | 327 | 355 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.5E-9 | 329 | 354 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 330 | 354 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.6E-4 | 332 | 352 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MEFDSIPQDA MWQMNLSSSQ TMESGPYPEH PGEPDCSYYI RTGLCRFGAT CRFNHPPNRK 60 LAIATARMKG EFPERLGQPE CQYYLKTGTC KFGATCRFHH PKDKAGVAGR VALNILGYPL 120 RPNESECAYY LRTGQCKFAN TCKFHHPQPS NMVLSMRGSP VYPTVQSPTT PGQQSYXXXX 180 XXXTNWSSSS YIPSPRWQGP SSYAPLILPQ GVVSVPGWST YNGQMGSDSP QQTMGNDQTY 240 GTSRQGEPEN AGLQGAYPQF RSGSVPLGFY ALQRENIFPE RPDQPECQFY MKTGDCKFGA 300 VCRFHHPRER KIPAPDCVLS PIGLPLRPGE PLCVFYSRYG ICKFGPSCKF DHPMGIFTYN 360 VSTSPLADAP GRRLLGSSSG PAALSLSSEG LVESGSAKPR RLSLSETRQI PSGDDNIDDE 420 G |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012569151.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU624138 | 0.0 | EU624138.1 Medicago sativa zinc finger protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012569151.1 | 0.0 | LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein ZFN-like | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A1S3E261 | 0.0 | A0A1S3E261_CICAR; LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein ZFN-like | ||||
STRING | AES80375 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5321 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-178 | zinc finger protein 1 |