PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012568996.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 569aa    MW: 62614.4 Da    PI: 8.6112
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012568996.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-1659105148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEde l +av+ + g++Wk+Ia+ ++  R++ qc +rwqk+l
   XP_012568996.1  59 KGGWTAEEDETLRNAVAAFKGKSWKKIAEFFP-DRSEVQCLHRWQKVL 105
                      688*****************************.************986 PP
2Myb_DNA-binding62.67.9e-20111157148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd+++v++v ++G+  W++Ia+ ++ gR +kqc++rw+++l
   XP_012568996.1 111 KGPWTQEEDDKIVELVSKYGPTKWSLIAKSLP-GRIGKQCRERWHNHL 157
                      79******************************.*************97 PP
3Myb_DNA-binding52.98.6e-17163206146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT +E++ l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++
   XP_012568996.1 163 KDAWTLDEELALMNAHRIHGNK-WAEIAKVLP-GRTDNAIKNHWNS 206
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.36354105IPR017930Myb domain
SMARTSM007172.1E-1458107IPR001005SANT/Myb domain
PfamPF002495.0E-1559105IPR001005SANT/Myb domain
SuperFamilySSF466896.89E-1560115IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-1861110IPR009057Homeodomain-like
CDDcd001671.84E-1262105No hitNo description
PROSITE profilePS5129433.124106161IPR017930Myb domain
SuperFamilySSF466891.42E-31108204IPR009057Homeodomain-like
SMARTSM007171.9E-18110159IPR001005SANT/Myb domain
PfamPF002496.8E-19111157IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-27111160IPR009057Homeodomain-like
CDDcd001675.46E-16113157No hitNo description
Gene3DG3DSA:1.10.10.602.4E-22161212IPR009057Homeodomain-like
SMARTSM007179.7E-16162210IPR001005SANT/Myb domain
PROSITE profilePS5129422.029162212IPR017930Myb domain
PfamPF002495.9E-15163206IPR001005SANT/Myb domain
CDDcd001678.86E-12165208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MAELKLEECC MENKQSTVAS CSSASEGSGS AIHKSPGICS PTSTSPPHRR TTGPIRRAKG  60
GWTAEEDETL RNAVAAFKGK SWKKIAEFFP DRSEVQCLHR WQKVLNPELV KGPWTQEEDD  120
KIVELVSKYG PTKWSLIAKS LPGRIGKQCR ERWHNHLNPE IKKDAWTLDE ELALMNAHRI  180
HGNKWAEIAK VLPGRTDNAI KNHWNSSLKK KLDFYLATGK LPPIPKHTPL ASAKDPIRRF  240
ATKTIPVSSN KELNVAVETS SETTAISKPD DGGKNQFESS GTAREVGDSS SVPAIESTDS  300
DCAECRPETS NIDLSCGNSE QISRANFGTM YGPKSENSAL NGNSINGHCL NGKMSNSSSR  360
LITTSAQENQ TCGSLCYEPP LLAGSVPLDS LHLSILCMQN EYCSKLSPMG FITPPRGRDS  420
ELCTETPESI LKKAANTYPN TPSIYRRRKT GVQAITSPSK FLKVDNDSHA SNDPDKTKNN  480
SGSEVQTLSE SPASHGKKSV ILNNKAFNAS PPYRLRTKRT EVVKSVEKQL EFAFDKEKND  540
DSMNTVEKSA KRSNVLTEDC LHERKLVVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C8e-70582125159MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-70582125159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012568996.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0531440.0BT053144.1 Medicago truncatula clone MTYFL_FM_FN_FO1G-A-18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027188579.10.0transcription factor MYB3R-3
SwissprotQ6R0321e-153MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLA0A3Q7X4E90.0A0A3Q7X4E9_CICAR; transcription factor MYB3R-3
STRINGAES793310.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66163449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-139myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]