PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012568938.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ARF
Protein Properties Length: 671aa    MW: 75241 Da    PI: 6.2667
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012568938.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.21.3e-22116215197
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+kvlt sd++++g +++ +k+a+e+     +++++ +++l+ +d+++ +W +k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +++
  XP_012568938.1 116 FCKVLTASDTSTHGGFSVLRKHATEClppldMSQSTPTQELVAKDLHNYEWHFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL--RGNNG 208
                     99****************************9555555669************************************************..34899 PP

                     ..EEEEE CS
              B3  91 elvvkvf 97 
                     el+v+v+
  XP_012568938.1 209 ELRVGVR 215
                     9999997 PP
2Auxin_resp93.43.6e-31242323183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsse..rrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha++t++ F v+Y+Pr+  s+F+v+v+k+++a+++k+svGmRfkm+f+++ds+e  +r+sGt++g +d+++ +W nSkWrsLk
  XP_012568938.1 242 ASHAVATQTLFVVYYKPRM--SQFIVSVNKFMEAMNQKFSVGMRFKMSFDGDDSPEtdKRFSGTIIGEEDISS-HWLNSKWRSLK 323
                     789***************7..9********************************9833567*********777.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.76E-40102245IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-38106228IPR015300DNA-binding pseudobarrel domain
CDDcd100172.26E-19114215No hitNo description
PfamPF023621.4E-20116215IPR003340B3 DNA binding domain
PROSITE profilePS5086311.293116218IPR003340B3 DNA binding domain
SMARTSM010191.4E-19116218IPR003340B3 DNA binding domain
PfamPF065072.7E-29242323IPR010525Auxin response factor
PfamPF023092.6E-5551597IPR033389AUX/IAA domain
SuperFamilySSF542771.47E-11557637No hitNo description
PROSITE profilePS5174523.791561642IPR000270PB1 domain
PfamPF023093.7E-6607647IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MMLNHGGEDE LYEQLWKACA GPRVEVPRAG QRVFYFPQGH MEQLEVSTNQ ELNQRIPLFK  60
LPTKILCRVV NVHLLAEQET DEVYAQITLV PESNKIEPTS LDPCRAEPPR PKTHSFCKVL  120
TASDTSTHGG FSVLRKHATE CLPPLDMSQS TPTQELVAKD LHNYEWHFKH IFRGQPRRHL  180
LTTGWSTFVT SKRLVAGDTF VFLRGNNGEL RVGVRHLASP QSCMPLSVIS GQSMHLGVLA  240
TASHAVATQT LFVVYYKPRM SQFIVSVNKF MEAMNQKFSV GMRFKMSFDG DDSPETDKRF  300
SGTIIGEEDI SSHWLNSKWR SLKVQWDEPA SIPRPDRISP WEIEPLSASV PTSVQPPPPV  360
KYKRPRLPSE VPDLGDTALG DSAYWEAGLT QSDITQVNVM SENKRSDNMH IWHHIQTDNN  420
KISRNSISRN PTDGSWLSSP HSSCPSHLCQ DASDDSKNVS VSPWPISKTN SEIPNNDRLI  480
NEVDKENKIE AATSCRLFGI DLNQNAANAY GVTSEGCAVT PLSRTDANHN MPDISKASKE  540
MIQEQLQVSP KETPSKQINS RSCTKVQMQG VAVGRAVYLT ALDGYNQLID ELEKLFDIKG  600
QLQVRNKWEI VFTDDEGDMM LVGDDPWPEF CNMVRRIFIC SSQDVNKMSS GTKLPISSIE  660
ETVISSDTTE T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-165934817357Auxin response factor 1
4ldw_A1e-165934817357Auxin response factor 1
4ldw_B1e-165934817357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012568938.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-56AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012568938.10.0auxin response factor 9
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A1S3E0G10.0A0A1S3E0G1_CICAR; Auxin response factor
STRINGXP_007140507.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9