PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012568937.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

C2H2

Protein Properties

Length: 158aa MW: 18101.2 Da PI: 8.0813

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012568937.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.8e-05	43	65	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ Fs+ L H++ H XP_012568937.1 43 YSCTFCKRGFSNAQALGGHMNIH 65 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.85E-6	41	69	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.0E-4	41	68	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.323	43	70	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	45	65	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051973	Biological Process	positive regulation of telomerase activity
GO:0003676	Molecular Function	nucleic acid binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MSYSYFPISC QRKMEYNTQN SNKSEQIRWS SDDIGGPGQV RSYSCTFCKR GFSNAQALGG 60 HMNIHRRDRA KLKQSSEENL ISLDISTKNT NEHVDLEYNH ENQRGKLINI TKELPFVDIK 120 GSGVMAHRIE DKKGDLDLEL RLGFEPMDSS TLSTRSFF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	65	73	RRDRAKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Activation factor which mediates telomerase activity and potentiates responses to auxin through the regulation of BT2. Binds in vitro to the DNA sequence 5'-GACAGTGTTAC-3' of the BT2 promoter. {ECO:0000269\|PubMed:15486103, ECO:0000269\|PubMed:17220202}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012568937.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004492174.1	1e-116	transcriptional regulator TAC1-like
Swissprot	Q9SR34	9e-18	TAC1_ARATH; Transcriptional regulator TAC1
TrEMBL	A0A1S3DZK5	1e-115	A0A1S3DZK5_CICAR; transcriptional regulator TAC1-like
STRING	XP_004492174.1	1e-116	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53820.1	4e-20	C2H2 family protein

Publications ? help Back to Top
Ren S,Johnston JS,Shippen DE,McKnight TD TELOMERASE ACTIVATOR1 induces telomerase activity and potentiates responses to auxin in Arabidopsis. Plant Cell, 2004. 16(11): p. 2910-22 [PMID:15486103] Ren S,Mandadi KK,Boedeker AL,Rathore KS,McKnight TD Regulation of telomerase in Arabidopsis by BT2, an apparent target of TELOMERASE ACTIVATOR1. Plant Cell, 2007. 19(1): p. 23-31 [PMID:17220202]