PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012568820.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family SBP
Protein Properties Length: 779aa    MW: 87585.8 Da    PI: 6.3947
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012568820.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP112.62.3e-35122199178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +Cqv gCe+d+se+k yhrrh+vC  +++a++vl++g+ +r+CqqC++fh ls+fD++krsCrr+L++hn rrr+k++
  XP_012568820.1 122 RCQVTGCEVDISELKGYHRRHRVCLRCANAATVLLDGEAKRYCQQCGKFHVLSDFDKDKRSCRRKLERHNTRRRRKAS 199
                     6*************************************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.9E-27117184IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.034120197IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.31E-32122201IPR004333Transcription factor, SBP-box
PfamPF031102.8E-27123197IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 779 aa     Download sequence    Send to blast
MESQSHSILP SMDPSEDLSS VWDLTYFLDF NLDEDTSLPL NLDDKIPPLP PTPNPNPPNT  60
NPNPPNTIPN PQIRKRDPRL TCSNFLAGVV PCACPELDAQ LEENGLPGKK RARTARASTS  120
SRCQVTGCEV DISELKGYHR RHRVCLRCAN AATVLLDGEA KRYCQQCGKF HVLSDFDKDK  180
RSCRRKLERH NTRRRRKASD STEVVDHELQ IVTQNEDSNC DGEIGIDYSN LSSQNIDKRV  240
SPDHEEEPSA IRSSSPETQN INSDSVVSVV ASAETQVNVG KDVSNISKSP SYCDNRSDYS  300
SMCQTGRISF KLYDWNPAEF PRRLRNQICQ WLASMPMELE GYIRPGCTIL TIFIAMPNIM  360
WIGLLKDPMY YMHDLVAPRN LLWGRGSALI HLNDTIFSVM KDGSSVTEVE VNMQVPRLHY  420
IHPTCFEAGK PMEFFACGSN LLQPKFRFLV SFYGKYLKCE YCVPSPHNWT EDNSSCAFDN  480
QLYKICIPHT EENLMGPAFI EVENESGLSN FIPVLIGDKE ICTEMKRLQK KLDVSLLYKQ  540
FRSAAGGSIC SSCEAFVHTQ TSSSLDLLLD IAWLLKNPAS ENFERVVSTS HIQRCCYLLD  600
FLVCNDSTIM LGKILPNLII LTEIVKSNLS DVDTAQLLKC MGNARDAIYQ KHHKGGGIVF  660
HSKMEDCQSC SQDDMLSVVE VNSQGILSRA DAELGYVRSL AFDEKNHSTP LLKRDIIMNV  720
EELPNKCDHQ YLTKGFLSSR PTIFVLVSIG VCLAVCVSVL HHGRVNELAV SIRRCLFNH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A1e-38121200483squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183195RRKLERHNTRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012568820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1519141e-139AC151914.19 Medicago truncatula clone mth2-29f16, complete sequence.
GenBankAC1643951e-139AC164395.7 Medicago truncatula clone mth2-69h11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012568820.10.0squamosa promoter-binding-like protein 7
TrEMBLA0A1S3DZC60.0A0A1S3DZC6_CICAR; squamosa promoter-binding-like protein 7
STRINGAES642860.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64703450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.10.0squamosa promoter binding protein-like 7