PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012568732.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | GRAS | ||||||||
Protein Properties | Length: 549aa MW: 62412.7 Da PI: 5.1131 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 429.4 | 2.8e-131 | 175 | 549 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilkfs 94 l+e L++cA+a++++d+e +++l+++ls+++s +g+p+qRl ay++eAL a+la+s+s++yk+l+++e +++ s+e l+ +++++e++P+lkf+ XP_012568732.1 175 LKEMLFTCAKAIEANDMEITEWLMSELSKMVSVSGNPIQRLGAYMLEALVAKLASSGSTIYKSLKCKEPVTTTsSKELLSHMHALYEICPYLKFG 269 5789**************************************************************999877757777888899*********** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187 ++ aN I ea+++e++vHiiDf+i+qG+QW++L+qaLa +p+g+p++RiTg+++++s + l +g+rL+k+A++ +v fef++ + + + XP_012568732.1 270 YMSANGVIAEALKNESEVHIIDFQINQGIQWISLIQALAGKPGGSPKIRITGFDDSTSAyaRGGGLDVVGKRLSKLAQSYNVVFEFHA-IKADPT 363 *******************************************************998899999************************.688899 PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282 +++le++++++ Ea+aVn++++lh+++de+v+ ++rd++++lvk+lsPkvv++veqe+++n+ sF+ rf+e+++yy a+f+s+++ lpre++er XP_012568732.1 364 EVKLEDFELRHSEAIAVNFAMMLHHVPDENVHGWNHRDRLVRLVKRLSPKVVTLVEQESNTNNLSFFPRFVETMNYYLAVFESIDVALPREHRER 458 9********************************************************************************************** PP GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 i+vE+++l+re+vn+vaceg+er+erhe l+kWr+ +++aGF+++pls++++++++ ll+ +++ y++ee++g+l+lgW++++L++ SaWr XP_012568732.1 459 INVEQHCLAREVVNLVACEGSERVERHELLKKWRSCFTMAGFTSYPLSSFINCSIRNLLESYQGL-YTLEEKDGALYLGWMNQALITSSAWR 549 ***************************************************************44.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 63.922 | 149 | 530 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.8E-129 | 175 | 549 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 549 aa Download sequence Send to blast |
MQTSHIHKMS YDSDRFSIDP IQNLESYSFM PNEILENYSS SDNSSHSILT YPSFHVLEQH 60 STLESSMDKN SPSSFSFSPN NSPVSNLHSN SYAFRSQSSL EIINDSLENE SCLMHNQDDL 120 WHKIRELENA MLGHDDADML DIYDDTVIIQ EECDPILLEA EKWNKMMEMV SRGDLKEMLF 180 TCAKAIEAND MEITEWLMSE LSKMVSVSGN PIQRLGAYML EALVAKLASS GSTIYKSLKC 240 KEPVTTTSSK ELLSHMHALY EICPYLKFGY MSANGVIAEA LKNESEVHII DFQINQGIQW 300 ISLIQALAGK PGGSPKIRIT GFDDSTSAYA RGGGLDVVGK RLSKLAQSYN VVFEFHAIKA 360 DPTEVKLEDF ELRHSEAIAV NFAMMLHHVP DENVHGWNHR DRLVRLVKRL SPKVVTLVEQ 420 ESNTNNLSFF PRFVETMNYY LAVFESIDVA LPREHRERIN VEQHCLAREV VNLVACEGSE 480 RVERHELLKK WRSCFTMAGF TSYPLSSFIN CSIRNLLESY QGLYTLEEKD GALYLGWMNQ 540 ALITSSAWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-59 | 179 | 549 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012568732.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004491478.1 | 0.0 | scarecrow-like protein 21 | ||||
Refseq | XP_012568732.1 | 0.0 | scarecrow-like protein 21 | ||||
Swissprot | Q9LDL7 | 0.0 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | A0A1S3DZ05 | 0.0 | A0A1S3DZ05_CICAR; scarecrow-like protein 21 | ||||
STRING | XP_004491476.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
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