PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012568597.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C2H2 | ||||||||
Protein Properties | Length: 303aa MW: 34840.7 Da PI: 7.3539 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.3 | 0.00051 | 65 | 87 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k+Fs+ L H r H XP_012568597.1 65 HKCEFCDKTFSSGKALGGHKRFH 87 79**************9999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.99E-5 | 63 | 89 | No hit | No description |
PROSITE profile | PS50157 | 10.055 | 65 | 87 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 9.1E-8 | 65 | 88 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 67 | 87 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MDCNDQKNKF NNNLLQYTRK NSMKAIEKKK SLASTCHDSS KVYVEPKGHD DEGSPSEKPT 60 SSILHKCEFC DKTFSSGKAL GGHKRFHLQA LKKEKEDDNF PSKKALYGHM RSHPNREWRG 120 IHPNKDNYNI DYYDDHDQYI LSQPKEFGID DESNSWPPKS FKTDKRGRKD IRCKEVVNAC 180 HILMYMSRDT RLHSNLNENL DDEAKDEKVL PSTSGLIGDN IGEINNSNSK RMKLLVKFKN 240 PCSTSKDNIL MEKDCYQHGS YDGEEKKSNM PHEQIRESSQ SISKNIIGFD LNDAPNNVDD 300 ETN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012568597.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003618052.1 | 4e-80 | zinc finger protein AZF1 | ||||
TrEMBL | G7K0M6 | 9e-79 | G7K0M6_MEDTR; C2H2 and C2HC zinc finger protein | ||||
STRING | AET01011 | 2e-79 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9737 | 24 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56200.1 | 1e-11 | C2H2 family protein |