PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012568546.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C3H | ||||||||
Protein Properties | Length: 913aa MW: 104082 Da PI: 3.9995 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.9 | 3.5e-08 | 467 | 486 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 lC+ffa+ G+C +G++C+F H XP_012568546.1 467 LCDFFAK-GWCIRGSSCSFLH 486 8******.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0096 | 462 | 488 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.333 | 462 | 489 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.1E-6 | 462 | 486 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.4E-6 | 467 | 486 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010220 | Biological Process | positive regulation of vernalization response | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 913 aa Download sequence Send to blast |
MSISDSPVAD DPSLQDDEDD DEEEEEEEEE EIEEEVEEEE EHEEEQEEEE EIEEQQQQQE 60 EEEEEEVEEV EEEEEEEEEE EEEEEEEEVE EEEEEVVEEE EEEVVEEEEE EEEEEEEKEE 120 EVEEVEEEEE VEEVEEEEEE EVDEEKGEEV EEEEVETIEV EEEEEEEEVE EEEVETVEVE 180 EEEEEEEEEE QEEETIGMEK EEKEEIAMEE EEEKEEEAIK VKEEEEQEEA EAIKIKKEEE 240 QEAVVEEKEV VPDSLLDADI LNKDLSQHME FKVKEENMGP VSSVAENPVV MKSSHYMEEN 300 DAVFKASVPS HEAITLKKEE FHLKQEISSP PKSSANLISA EDGKNQGLNV DLDNARSPVQ 360 RKTFGGGSEP DCNSKASLSD VKDIDSRATK SSSDMGKDVV TGVIQRDNFV EDADGGPNSK 420 KKIMQSEIES IVDVKQTTSR FGHDSWRTRD LSPSADIKDG NKRPAILCDF FAKGWCIRGS 480 SCSFLHIKDS VNNSDQEAEG DSFTALQKRE LKLEKGVKER LDGLRTNEEE ASPSWHPSHE 540 KEKFLMRDSL FPESRSAFNA SNNYFTSNHS SYSSRAEGMT ANRNQHMYRG FSNALCSQKL 600 LNSEKEYHAL KSTFSSERED LPLVGSSRVP PHSNGYKLKT CSNNWEPSVP FRPSFFITSM 660 NVSSPGDLYD PLRDSIEIPN IGDGSLKASL LIRGSSIQAS SQARTCDDSA AVGKHMSDLN 720 DDKSSVSSHN KFYENEPNRS SVPRGKDCLS TKTEITSGTC SNYQNGYVDV GQHTFSVEDT 780 METEKKRTEH DARHHGEGSG HKKRRVSKDN KIYEMDVDFQ TDGSVQKETK AVKIFRAALV 840 DLVKELLKPF WHEGRLSKDA HIVIVKKSVD KVVSTLEAHQ IPTTEDTAKQ YVSSCRSKIA 900 KLVNGYVSKY GKS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 784 | 804 | KKRTEHDARHHGEGSGHKKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012568546.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004485808.1 | 0.0 | pinin isoform X1 | ||||
TrEMBL | A0A1S2X9S8 | 0.0 | A0A1S2X9S8_CICAR; pinin isoform X1 | ||||
STRING | XP_004485808.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 3e-32 | C3H family protein |