PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012568527.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | bHLH | ||||||||
Protein Properties | Length: 326aa MW: 35983.1 Da PI: 5.0812 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30 | 9.1e-10 | 247 | 289 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + ++RR+ri +++ L+el+P+ K++ +++LekA+ Y+k Lq XP_012568527.1 247 AAKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAISYVKFLQ 289 569*******************5.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-12 | 237 | 297 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.24E-13 | 238 | 297 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.281 | 239 | 288 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.14E-11 | 241 | 293 | No hit | No description |
SMART | SM00353 | 1.0E-11 | 245 | 294 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.9E-7 | 249 | 289 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MALANKNILH ASSLSTKFQT FIFDEETNTM EINSLMSHGV NDYQKSMVED EDGSQSTNGL 60 SNDSASASAT THSPTLCGSS TKGYVYNNTS YQLDEEESLI NFKGNEYYSN LVMQGSESLL 120 SFQQSWMVSN DNNLQEWNHV SPKSTTNLCM VEGLSNLETS SGCYGSIFKE KQSGESSCGW 180 LYSEPNVPCD DHSLINESAT HESISVFKKR SSMGENMQPA NAKKPCTIAS KTEKHKSNPS 240 KDPQSVAAKN RRERISERLK ILQELVPNGS KVDLVTMLEK AISYVKFLQL QVKVLAADEL 300 WPIQCGKAPD IGQVKQAIDA ILSSQQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012568527.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031123 | 1e-107 | KT031123.1 Glycine max clone HN_CCL_81 bHLH transcription factor (Glyma14g07590.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012568527.1 | 0.0 | transcription factor bHLH83 | ||||
TrEMBL | A0A1S3DYF6 | 0.0 | A0A1S3DYF6_CICAR; transcription factor bHLH83 | ||||
STRING | XP_004490858.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4937 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37800.1 | 4e-55 | RHD SIX-LIKE 1 |