PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012568375.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

ZF-HD

Protein Properties

Length: 258aa MW: 28180 Da PI: 6.5569

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012568375.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	95.4	4.7e-30	56	113	2	60
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++v+Y+eC+kNhA+s GghavDGC+Ef+++ geegt +a+ CaAC+CHRnFHR+e + e XP_012568375.1 56 STVKYRECQKNHAVSFGGHAVDGCCEFIAA-GEEGTLEAVICAACNCHRNFHRKEIDGE 113 579************************9.999******************98865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	5.5E-28	58	110	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	3.3E-26	59	110	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-19	59	120	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.961	60	109	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	8.97E-20	184	256	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-29	187	257	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.3E-23	198	255	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MEFDEQEEQE EEMEIPEAST PVPASYDSLG NSASRSKFAV GADGRKISGG GGGFASTVKY 60 RECQKNHAVS FGGHAVDGCC EFIAAGEEGT LEAVICAACN CHRNFHRKEI DGETVSSCQR 120 SQPPPPPPQY HHYNQFSPYY HRTSPSTAGY LHHHLATPPI SHHRPLALPA AASGGGFSGE 180 EDDMSNPSSS GGGGGGSKKR FRTKFTQEQK EKMLAFAEQH GWRIQKHDEA DVEQFCAENC 240 VKRNVLKVWM HNNKNTLG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	4e-27	197	256	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012568375.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012568375.1	0.0	zinc-finger homeodomain protein 2-like
Swissprot	Q6YXH5	7e-67	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A1S3DY42	0.0	A0A1S3DY42_CICAR; zinc-finger homeodomain protein 2-like
STRING	XP_004490406.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	3e-59	homeobox protein 22

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]