PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012568374.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | ZF-HD | ||||||||
Protein Properties | Length: 311aa MW: 34529.3 Da PI: 7.4097 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 94.9 | 6.4e-30 | 56 | 113 | 2 | 60 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++v+Y+eC+kNhA+s GghavDGC+Ef+++ geegt +a+ CaAC+CHRnFHR+e + e XP_012568374.1 56 STVKYRECQKNHAVSFGGHAVDGCCEFIAA-GEEGTLEAVICAACNCHRNFHRKEIDGE 113 579**************************9.999********************98865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 3.0E-19 | 56 | 120 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 7.4E-28 | 58 | 110 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.4E-26 | 59 | 110 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.961 | 60 | 109 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.01E-19 | 184 | 257 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-29 | 187 | 259 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.1E-23 | 198 | 255 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MEFDEQEEQE EEMEIPEAST PVPASYDSLG NSASRSKFAV GADGRKISGG GGGFASTVKY 60 RECQKNHAVS FGGHAVDGCC EFIAAGEEGT LEAVICAACN CHRNFHRKEI DGETVSSCQR 120 SQPPPPPPQY HHYNQFSPYY HRTSPSTAGY LHHHLATPPI SHHRPLALPA AASGGGFSGE 180 EDDMSNPSSS GGGGGGSKKR FRTKFTQEQK EKMLAFAEQH GWRIQKHDEA DVEQFCAENC 240 VKRNVLKVWM HNNKNTLVRR KGREGNNVYE NNITGSGYSR VNMVHCFSVD SHRRQPCISE 300 MCRHLLYLQR R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-26 | 197 | 256 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012568374.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012568375.1 | 0.0 | zinc-finger homeodomain protein 2-like | ||||
Swissprot | Q6YXH5 | 1e-65 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A1S3DY42 | 0.0 | A0A1S3DY42_CICAR; zinc-finger homeodomain protein 2-like | ||||
STRING | XP_004490406.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 7e-58 | homeobox protein 22 |
Publications ? help Back to Top | |||
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