PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012568374.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ZF-HD
Protein Properties Length: 311aa    MW: 34529.3 Da    PI: 7.4097
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012568374.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer94.96.4e-3056113260
     ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                     ++v+Y+eC+kNhA+s GghavDGC+Ef+++ geegt +a+ CaAC+CHRnFHR+e + e
  XP_012568374.1  56 STVKYRECQKNHAVSFGGHAVDGCCEFIAA-GEEGTLEAVICAACNCHRNFHRKEIDGE 113
                     579**************************9.999********************98865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-1956120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047707.4E-2858110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.4E-2659110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.96160109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.01E-19184257IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-29187259IPR009057Homeodomain-like
TIGRFAMsTIGR015653.1E-23198255IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEFDEQEEQE EEMEIPEAST PVPASYDSLG NSASRSKFAV GADGRKISGG GGGFASTVKY  60
RECQKNHAVS FGGHAVDGCC EFIAAGEEGT LEAVICAACN CHRNFHRKEI DGETVSSCQR  120
SQPPPPPPQY HHYNQFSPYY HRTSPSTAGY LHHHLATPPI SHHRPLALPA AASGGGFSGE  180
EDDMSNPSSS GGGGGGSKKR FRTKFTQEQK EKMLAFAEQH GWRIQKHDEA DVEQFCAENC  240
VKRNVLKVWM HNNKNTLVRR KGREGNNVYE NNITGSGYSR VNMVHCFSVD SHRRQPCISE  300
MCRHLLYLQR R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-261972561675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012568374.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012568375.10.0zinc-finger homeodomain protein 2-like
SwissprotQ6YXH51e-65ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLA0A1S3DY420.0A0A1S3DY42_CICAR; zinc-finger homeodomain protein 2-like
STRINGXP_004490406.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.17e-58homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]