PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012568182.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

G2-like

Protein Properties

Length: 396aa MW: 44929.8 Da PI: 7.7556

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012568182.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	94.8	6.7e-30	38	90	1	54
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 kprl+Wt++LHerF+eav+qLGG++kAtPkt+l+lm+++gLtl+h+kSHLQ YR XP_012568182.1 38 KPRLKWTTDLHERFIEAVNQLGGADKATPKTVLKLMGIPGLTLYHLKSHLQ-YR 90 79************************************************9.67 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.311	35	95	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.0E-28	36	92	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.13E-13	37	90	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.5E-20	38	89	IPR006447	Myb domain, plants
Pfam	PF00249	3.3E-8	40	88	IPR001005	SANT/Myb domain
Pfam	PF14379	2.0E-25	138	184	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MYYNHHQQAR NMHALRMQIQ GGGNGSGDSG LVLSTDAKPR LKWTTDLHER FIEAVNQLGG 60 ADKATPKTVL KLMGIPGLTL YHLKSHLQYR ISKTMNGQTN TGSSKIALTT EVSSRMSEAS 120 GIHMKHLSIG LQTNKNSEIN EAFNMQMEVQ RRLHEQLEVQ KHLQLRIEAQ GKYLQSVLEK 180 AKETLGTQNL GTMGLDDAKV QLSKFTSRVS NENLDSKFLG LKELHVHWPQ QTREDETIDY 240 SMGSFLTNSE DSQRDQEMHN KGMKLGVSKE CVDEPMPLKN DFTLCEKEKE NVMFVSSSNH 300 RVLKDGLTTS LLLMNVGGVH EKENMWKRTI SKEDLKGEEW KRINNIETNG VQLKLNSDKI 360 SQDYRLANFE VKLDLNSNDA SSQCQKFDLN GFSWNC

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MYYNHHQQAR NMHALRMQIQ GGGNGSGDSG LVLSTDAKPR LKWTTDLHER FIEAVNQLGG  60
ADKATPKTVL KLMGIPGLTL YHLKSHLQYR ISKTMNGQTN TGSSKIALTT EVSSRMSEAS  120
GIHMKHLSIG LQTNKNSEIN EAFNMQMEVQ RRLHEQLEVQ KHLQLRIEAQ GKYLQSVLEK  180
AKETLGTQNL GTMGLDDAKV QLSKFTSRVS NENLDSKFLG LKELHVHWPQ QTREDETIDY  240
SMGSFLTNSE DSQRDQEMHN KGMKLGVSKE CVDEPMPLKN DFTLCEKEKE NVMFVSSSNH  300
RVLKDGLTTS LLLMNVGGVH EKENMWKRTI SKEDLKGEEW KRINNIETNG VQLKLNSDKI  360
SQDYRLANFE VKLDLNSNDA SSQCQKFDLN GFSWNC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-17	37	93	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-17	37	93	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-17	38	93	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-17	38	93	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-17	38	93	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-17	38	93	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-17	37	93	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-17	37	93	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-17	37	93	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-17	37	93	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-17	37	93	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-17	37	93	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012568182.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT139585	0.0	BT139585.1 Medicago truncatula clone JCVI-FLMt-20F6 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004489714.1	0.0	myb-related protein 2-like isoform X1
Swissprot	Q9SQQ9	1e-106	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A1S2XI54	0.0	A0A1S2XI54_CICAR; myb-related protein 2-like isoform X1
STRING	XP_004489714.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-103	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]