PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012568171.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | bHLH | ||||||||
Protein Properties | Length: 261aa MW: 29168.3 Da PI: 7.9385 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.9 | 2.8e-11 | 68 | 114 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h e+ErrRR+ri + +++Lr l+P + K++Ka+ L ++++ +k+L XP_012568171.1 68 KNHREAERRRRNRISDHLAKLRGLVPYS-----AKMDKATLLAEVIKQVKEL 114 58*************************6.....6************998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.646 | 65 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.8E-9 | 68 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-12 | 69 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.01E-12 | 69 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-10 | 71 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 6.14E-6 | 155 | 196 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MDYGSDISRI VFNAPSYGFG ASNGISRDGL VSPQSLVLDT EMRELVKSPP MVGKKKICDA 60 NKTLVALKNH REAERRRRNR ISDHLAKLRG LVPYSAKMDK ATLLAEVIKQ VKELKKNTEE 120 SSKGYLIPMD NDEVKVEIEP YENGGLNGSI PYKASICCDY RPELLSDLKQ TLDTLKVQLV 180 RAELSTLGDR VKNEFVYTCC KADIYNVELC QIIASNVHQA LSSVLDKGST SLDYSLRVSH 240 SFNQLQHQTS TLSCNHEFCS C |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012568171.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012568171.1 | 0.0 | putative transcription factor bHLH107 | ||||
TrEMBL | A0A1S3DZA0 | 0.0 | A0A1S3DZA0_CICAR; putative transcription factor bHLH107 | ||||
STRING | XP_004485888.1 | 1e-144 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8986 | 31 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 1e-30 | bHLH family protein |