PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012568037.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | LBD | ||||||||
Protein Properties | Length: 129aa MW: 14540.5 Da PI: 7.8643 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 143.2 | 7.9e-45 | 7 | 105 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC++dC++apyfp e+p+kfanvhk+FGasnv+k+l+++ +++reda++sl+yeAear++dPvyG+vg i+ lq+ql +l++el+ XP_012568037.1 7 PCAACKFLRRKCNQDCIFAPYFPPEEPHKFANVHKIFGASNVSKILNEVLPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQLIRLQKELD 101 7*********************************************************************************************9 PP DUF260 96 llke 99 ++++ XP_012568037.1 102 ATNA 105 9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.796 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.9E-44 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MMASNSPCAA CKFLRRKCNQ DCIFAPYFPP EEPHKFANVH KIFGASNVSK ILNEVLPHQR 60 EDAVNSLAYE AEARIKDPVY GCVGAISVLQ RQLIRLQKEL DATNADLIRF STNQGSSFFN 120 YPSNWNNDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-62 | 3 | 114 | 7 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-62 | 3 | 114 | 7 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012568037.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC174342 | 1e-114 | AC174342.16 Medicago truncatula chromosome 6 clone mth2-166e17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012568038.1 | 1e-93 | LOB domain-containing protein 25 isoform X1 | ||||
Swissprot | Q8L8Q3 | 3e-67 | LBD25_ARATH; LOB domain-containing protein 25 | ||||
TrEMBL | A0A1S3DXW6 | 3e-92 | A0A1S3DXW6_CICAR; LOB domain-containing protein 25 isoform X1 | ||||
STRING | XP_004489212.1 | 9e-93 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 1e-69 | LOB domain-containing protein 25 |
Publications ? help Back to Top | |||
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