PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012567870.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 308aa    MW: 35100.8 Da    PI: 7.6429
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012567870.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.5e-14116167155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h  +Er+RR+++N+ f+ Lr+l+P++   ++++ + a+i+  A++++k+L+
  XP_012567870.1 116 QRMTHITVERNRRKQMNEYFAVLRSLMPPS---YAQRGDQASIVGGAINFVKELE 167
                     79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.04E-12114171No hitNo description
SuperFamilySSF474597.98E-17115179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.732115166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-11116167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-14116182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-9121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MVLEAMVYPR DQFTHNSNEY LYSFVGTNAS ERSWHQNQIA EENDVFGIIN KKLDHNIQTN  60
WDSSSPSLLQ NVIDKWDSNP SLLTSTIEAT ATTTTTCRRK RRHIKCIKNE VEIENQRMTH  120
ITVERNRRKQ MNEYFAVLRS LMPPSYAQRG DQASIVGGAI NFVKELEQLL HCMKGEKKKN  180
EQVQENGLII GSSPFAEFFT FPQYSTWLTQ SNTCYISKQN QSRAMSDIEV TLVDNHANIK  240
IILKKRHGQV MKMVVGLQNL GFNVLHLNVA TADDMVLVSL SIKQVEEGCH HNTGDEIAAA  300
VNQLSRTI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116127RMTHITVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012567870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004517115.10.0transcription factor bHLH94-like
SwissprotQ9C7T41e-66BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A1S2Z8T60.0A0A1S2Z8T6_CICAR; transcription factor bHLH94-like
STRINGXP_004517115.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-68bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]