PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012567497.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 346aa    MW: 37766.3 Da    PI: 6.7852
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012567497.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.5e-173883147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd +l ++v q+G ++W++Iar +  gR++k+c++rw + 
   XP_012567497.1 38 KGPWSPEEDAILSRLVSQFGARNWSLIARGIA-GRSGKSCRLRWCNQ 83
                     79******************************.***********985 PP
2Myb_DNA-binding56.85.2e-1890134147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T eEd ++v a++ +G++ W++Iar ++ gRt++ +k++w++ 
   XP_012567497.1  90 RKPFTDEEDRIIVSAHAVHGNK-WAAIARLLP-GRTDNAIKNHWNST 134
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.6693388IPR017930Myb domain
SuperFamilySSF466892.26E-3035131IPR009057Homeodomain-like
SMARTSM007174.9E-153786IPR001005SANT/Myb domain
PfamPF002495.4E-163883IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-263991IPR009057Homeodomain-like
CDDcd001671.81E-144082No hitNo description
PROSITE profilePS5129421.73889139IPR017930Myb domain
SMARTSM007171.0E-1689137IPR001005SANT/Myb domain
PfamPF002492.3E-1590134IPR001005SANT/Myb domain
CDDcd001677.90E-1392135No hitNo description
Gene3DG3DSA:1.10.10.608.1E-2492138IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEPEKPTVTA DPDGSGDEGL IALTESGNSN GNGRDRVKGP WSPEEDAILS RLVSQFGARN  60
WSLIARGIAG RSGKSCRLRW CNQLDPAVKR KPFTDEEDRI IVSAHAVHGN KWAAIARLLP  120
GRTDNAIKNH WNSTLRRRGV EHDKIKLESG NMIEDISLEK AKASSEETLS CGDVNSLKSS  180
EVRDVTSMEI VDDKHEGKAR TDGQLSHEVR EPPTLFKPVA RVSAFNVYQA FNSSQPSTSV  240
QRPVPMHGPI LQSSKPDMDF CKMLNGTHGD RSVPQQCGHG CCSLNGNNSK SSLLGPEFID  300
YSEPPSFPSF ELAAIATDIS NLAWLKSGLE NSSVKMMGEN AGRVNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-40351384107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012567497.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012567497.10.0transcription factor MYB1
SwissprotQ425751e-106MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A1S3DVH70.0A0A1S3DVH7_CICAR; transcription factor MYB1
STRINGGLYMA03G15810.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39863362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.14e-98myb domain protein 1
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]