PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012567417.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family Trihelix
Protein Properties Length: 780aa    MW: 86958.1 Da    PI: 7.9184
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012567417.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.41.2e-15688768186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+++ev++Li +r e++  ++  k k  lWee+sk++ + g++++p qCk  w +l ++y++ik+ +++     ++++ y++++e
  XP_012567417.1 688 KWKEEEVKKLIGVRGELNVIFQFVKGKNVLWEEISKNLLAYGINKNPGQCKYMWTSLLQKYEEIKNEKNR-----EERWLYLEDME 768
                     7****************************************************************99998.....46899**9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.15.103.5E-6720270IPR001279Metallo-beta-lactamase
SuperFamilySSF562813.84E-6921435IPR001279Metallo-beta-lactamase
SMARTSM008494.6E-2433230IPR001279Metallo-beta-lactamase
PfamPF127061.1E-1045181IPR001279Metallo-beta-lactamase
PfamPF075217.1E-6377407IPR011108Zn-dependent metallo-hydrolase, RNA specificity domain
PROSITE profilePS500908.002681745IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.2E-4683747IPR009057Homeodomain-like
SMARTSM007170.0021685747IPR001005SANT/Myb domain
PfamPF138371.0E-13686769No hitNo description
CDDcd122034.78E-16687752No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 780 aa     Download sequence    Send to blast
MEDSVQRRME QFYEGSDGPP LRVLPIGGLG EIGMNCMLVG NYDRYILIDA GVMFPGYEEL  60
GVQKIIPDTT FIKKWSHKIE AVVITHGHED HIGALPWVIP VLDSHTPIFA SSYTMELIKK  120
RLKDHGICVP SRLKLIRTRK KFVAGPFEIE PITVTHSIPD CCGLVLRCSD GNILHTGDWK  180
IDETPLDGKI FDREALEELS KEGVTLMMSD STNVLSPGRT MSESVVADAL VRHISAAKGR  240
VILTQFASNI NRLRSVKAAA DLTGRKLVFA GMSLRTYLDA AWKDGKVPID PSTLVKTEDI  300
DAYAPKDLLI VTTGSQAEPR AALNLASYGS GHSFKLTKED VVLYSAKVIP GNESRVMEML  360
NRISEIGPTI VMGKNECLHT SGHGYRGELE EVLRIVKPQH FLPIHGELLF LKEHELLGKS  420
TGIQHTAVIK NGEMLGVSHL RNRRVLSNGF ISLGKENLQL NYSDGDKAFG TSSELFIEER  480
LRIALDGIIV VSMEVCRPQN LDSSVENTLK GKIRITTKCL WLDKGKLLDA LHKAAHAALS  540
SCPVNCPLGH MEKTVSELLR KMVRKYSGKR PEVIAFAIEN PAAVIASEIN TRLSGKSHVG  600
GLSTFRNAVH QHRKENQSTK MQMRDDDNDV EGLLPKEDAT TSNGASSGYV PRMKSQMKND  660
GPDDAEECQS EKSSNSEAKP SKLVKRNKWK EEEVKKLIGV RGELNVIFQF VKGKNVLWEE  720
ISKNLLAYGI NKNPGQCKYM WTSLLQKYEE IKNEKNREER WLYLEDMERV LSDNEALAKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5a0t_A2e-842157919560RIBONUCLEASE J
5a0t_B2e-842157919560RIBONUCLEASE J
5a0v_A2e-842157919560RIBONUCLEASE J
5a0v_B2e-842157919560RIBONUCLEASE J
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012567417.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:25871650}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1355051e-135AC135505.15 Medicago truncatula chromosome 8 clone mth2-24j8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012567417.10.0ribonuclease J
SwissprotQ84W560.0RNJ_ARATH; Ribonuclease J
TrEMBLA0A1S3DV970.0A0A1S3DV97_CICAR; ribonuclease J
STRINGGLYMA06G17980.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50993450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.10.0Trihelix family protein
Publications ? help Back to Top
  1. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  2. Halpert M,Liveanu V,Glaser F,Schuster G
    The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities.
    Plant Mol. Biol., 2019. 99(1-2): p. 17-29
    [PMID:30511330]