PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012567404.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

C2H2

Protein Properties

Length: 425aa MW: 47948.7 Da PI: 8.5338

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012567404.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0012	370	390	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ CgksF ++ +++H++++ XP_012567404.1 370 VCSQCGKSF-KPEKMHKHMKSC 390 6******.********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06136	4.8E-41	12	301	IPR010369	Protein of unknown function DUF966

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence Send to blast
MESKGGEVRR LHIIYFLSHM GGHAEHPHLI RVLHLARNGV FLRDIKRWLG ELRGKDLPES 60 FAWSYKRRYK SGYVWQDLMD DDLITPISDN EYVLKGSQIH TTPFETHSIN EKKADTDVLT 120 EKKSCQVQVE EDKQKNQKQK PSLSEEESQI QQEKNDSEKN KLNQVSSEIS QDSLVFSSDR 180 SSVTDDETSK VEEEKLLIKE GNNEKSNEKF EAFSFPSLYH NLMSKKGKKD GHNKIDTPPD 240 SSFSTPSSSS SQSSFSKIRS NSTRVTSVFR NLISCGTVET NDASLILRNT AHKIVPKEPN 300 NMLAKGGEIC KEDKLGGSAR CFGTPWNYHD QNEHYGSARK SCDAEEPNRS RKKLSELLNQ 360 TPCKPFGGPV CSQCGKSFKP EKMHKHMKSC KGIKGMGTSG ATTIAEESSK LQRSTSSCRD 420 YLLQN

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence Send to blast

MESKGGEVRR LHIIYFLSHM GGHAEHPHLI RVLHLARNGV FLRDIKRWLG ELRGKDLPES  60
FAWSYKRRYK SGYVWQDLMD DDLITPISDN EYVLKGSQIH TTPFETHSIN EKKADTDVLT  120
EKKSCQVQVE EDKQKNQKQK PSLSEEESQI QQEKNDSEKN KLNQVSSEIS QDSLVFSSDR  180
SSVTDDETSK VEEEKLLIKE GNNEKSNEKF EAFSFPSLYH NLMSKKGKKD GHNKIDTPPD  240
SSFSTPSSSS SQSSFSKIRS NSTRVTSVFR NLISCGTVET NDASLILRNT AHKIVPKEPN  300
NMLAKGGEIC KEDKLGGSAR CFGTPWNYHD QNEHYGSARK SCDAEEPNRS RKKLSELLNQ  360
TPCKPFGGPV CSQCGKSFKP EKMHKHMKSC KGIKGMGTSG ATTIAEESSK LQRSTSSCRD  420
YLLQN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012567404.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004488584.1	0.0	uncharacterized protein LOC101493036
Refseq	XP_027190259.1	0.0	uncharacterized protein LOC101493036
Refseq	XP_027190262.1	0.0	uncharacterized protein LOC101493036
TrEMBL	A0A1S2XFH8	0.0	A0A1S2XFH8_CICAR; uncharacterized protein LOC101493036
STRING	XP_004488584.1	0.0	(Cicer arietinum)