PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_004517027.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 520aa MW: 56938 Da PI: 7.4267 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.3 | 3.9e-11 | 149 | 173 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C++++ t tCk+G++CkF H+ XP_004517027.1 149 GEKDCSHYMLTRTCKFGESCKFDHP 173 7889********************8 PP | |||||||
2 | zf-CCCH | 36 | 1.2e-11 | 200 | 225 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C++f++t Ck+G+rCkF+H+ XP_004517027.1 200 PGEPDCPYFLKTKKCKFGSRCKFNHP 225 5789*********************8 PP | |||||||
3 | zf-CCCH | 35.6 | 1.5e-11 | 244 | 267 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C f+++tG CkyG+ CkF+H++ XP_004517027.1 244 TPCAFYLKTGLCKYGAACKFHHPK 267 58********************96 PP | |||||||
4 | zf-CCCH | 38.3 | 2.3e-12 | 320 | 343 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG Ck+G++C+++H+ XP_004517027.1 320 EVDCPFYMKTGSCKFGATCRYNHP 343 689********************8 PP | |||||||
5 | zf-CCCH | 41.2 | 2.7e-13 | 406 | 429 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+++++tG+CkyG+rCk++H+ XP_004517027.1 406 QIECDYYMKTGICKYGERCKYHHP 429 568********************9 PP | |||||||
6 | zf-CCCH | 41.3 | 2.6e-13 | 457 | 482 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + e+C+++++tGtCk+G +CkF H+p XP_004517027.1 457 GVEICPYYLKTGTCKFGVTCKFDHPP 482 689*********************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0012 | 147 | 174 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.497 | 147 | 175 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.15E-5 | 148 | 174 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-8 | 149 | 173 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-4 | 199 | 226 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.065 | 199 | 227 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.1E-9 | 201 | 225 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.23E-5 | 204 | 225 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.8E-4 | 205 | 224 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.7E-6 | 240 | 267 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.239 | 240 | 268 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.1E-9 | 244 | 267 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.76E-6 | 244 | 268 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.0E-5 | 245 | 266 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.0E-6 | 317 | 344 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.817 | 317 | 345 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.0E-10 | 320 | 343 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.66E-5 | 321 | 344 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.1E-4 | 323 | 342 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-7 | 403 | 430 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.047 | 403 | 431 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.02E-7 | 407 | 432 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.7E-11 | 407 | 429 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-5 | 409 | 429 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.1E-6 | 455 | 482 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.873 | 455 | 483 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.6E-11 | 457 | 482 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.15E-5 | 458 | 482 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.4E-6 | 459 | 480 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 520 aa Download sequence Send to blast |
MENRIYSSYS PTNYRVGGAT STSPTRYYDP DSMFLSHYRR TAEAAAAASA HRYSSISDID 60 IAPPGVASRI SSSSTANYLS QTSPWSSAFP AANAGSLSLD LNRSTDALYH PTILSTIGQN 120 EAWYTTNSLT KRPRYETGST LPIYPQRPGE KDCSHYMLTR TCKFGESCKF DHPIWVPEGG 180 IPDWKEVPNI VPSEILPERP GEPDCPYFLK TKKCKFGSRC KFNHPNVPSE NADVSGLPER 240 PLETPCAFYL KTGLCKYGAA CKFHHPKDIQ IQVSDELSHT VEQTQTNSVL DGATGDSQPI 300 NPLIPPLLHN SKGLPVRLGE VDCPFYMKTG SCKFGATCRY NHPAMNAINP TISTLAPSVL 360 ASSAANLNIG VINPAACLYQ AFDPRLSNPV SQVGTTQTVF PQRPGQIECD YYMKTGICKY 420 GERCKYHHPL DRATPSMSKL QSTVKLTPAG LPRREKGVEI CPYYLKTGTC KFGVTCKFDH 480 PPPGEVMEMA KSSQGTSTNN GGETDTNENV LGSDPEEDHA |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_004517027.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681800 | 2e-57 | LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017. | |||
GenBank | LN713255 | 2e-57 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004517027.1 | 0.0 | zinc finger CCCH domain-containing protein 37 isoform X1 | ||||
Swissprot | Q941Q3 | 1e-169 | C3H37_ARATH; Zinc finger CCCH domain-containing protein 37 | ||||
TrEMBL | A0A1S2Z8M3 | 0.0 | A0A1S2Z8M3_CICAR; zinc finger CCCH domain-containing protein 37 isoform X1 | ||||
STRING | XP_004517027.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7558 | 33 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-165 | floral homeotic protein (HUA1) |