PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004516354.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C2H2 | ||||||||
Protein Properties | Length: 181aa MW: 20955.8 Da PI: 10.4686 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.4 | 1.2e-05 | 17 | 38 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++C+ksFs+ L H+++H XP_004516354.1 17 VCTICNKSFSNGKALGGHMKSH 38 6*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.05E-5 | 15 | 43 | No hit | No description |
PROSITE profile | PS50157 | 10.741 | 16 | 43 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.1E-10 | 16 | 40 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.9E-4 | 17 | 39 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 18 | 38 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MVEIRELSPT MENNSRVCTI CNKSFSNGKA LGGHMKSHLA KLPVPPKPPN NSQVIEYSLE 60 STKRPTHSFS SSSSSSSHSR NNPMHNLRSL KRNFYYTLAN FGRNSFFESC PKNPTRKRSK 120 RHRKQFKLAT EKRESTQYRL MYDEFDIEAA KTLVIISMKE WQQIEEKYNK EMAKVNGNES 180 T |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004516354.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004516354.1 | 1e-133 | zinc finger protein ZAT1-like | ||||
TrEMBL | A0A1S2Z7D6 | 1e-131 | A0A1S2Z7D6_CICAR; zinc finger protein ZAT1-like | ||||
STRING | XP_004516354.1 | 1e-132 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17314 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02030.1 | 4e-09 | C2H2-like zinc finger protein |