PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004516067.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

MYB_related

Protein Properties

Length: 915aa MW: 102520 Da PI: 6.1483

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004516067.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.9	4e-07	847	901	3	46
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHT.......TTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmg.......kgRtlkqcksrwqk 46 +WT+eE+el+ ++v+++ Wk+I + +Rt+ ++k++w + XP_004516067.1 847 PWTAEEEELIREGVQKFSFSdqqlPWKKILAFGShvfekncRRRTPQDLKDKWKN 901 7***************************98889999*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.40.10	3.1E-8	568	624	IPR013083	Zinc finger, RING/FYVE/PHD-type
SuperFamily	SSF57903	1.06E-8	571	625	IPR011011	Zinc finger, FYVE/PHD-type
PROSITE profile	PS50016	8.787	574	623	IPR019787	Zinc finger, PHD-finger
SMART	SM00249	5.8E-5	576	621	IPR001965	Zinc finger, PHD-type
PROSITE pattern	PS01359	0	577	620	IPR019786	Zinc finger, PHD-type, conserved site
PROSITE profile	PS50090	7.271	840	903	IPR017877	Myb-like domain
SMART	SM00717	4.7E-4	844	905	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-9	845	904	IPR009057	Homeodomain-like
CDD	cd11660	1.08E-11	846	904	No hit	No description
SuperFamily	SSF46689	1.27E-9	847	911	IPR009057	Homeodomain-like
Pfam	PF13921	6.9E-7	848	905	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 915 aa Download sequence Send to blast
MDSNNNNDEP SEPFSTLPWH WVMEALAGFK EITTSTLQGL IDAAPVRTDN FGENTKELIA 60 MRCLEEIYAS SSSFSSSTLD SRVGLDFSRT CDGVLQEILR EVPLSNLRIS GAQLLKWDVK 120 PFIKYRRADN VKCHLEQLKE SILEGTVPLT DHLKERSGLF QINHARTVCV NDGKCKDQSV 180 KDDGNSAYAE DLGAKESSAS LILGDGNKSS KECLPDNNRL SSRRNMVYSA DENFMSCLNE 240 KQVCINECDD SLRSTKRIKR NASTNFDSKK EKKLSRLGKE VSENLTEKYL PIFENVGHHT 300 EKNNRETLSD GPLQDSHNRC TASNLCQSSS QKEVFHDESG IPFNASLTPM EKTSGSKPWF 360 EHEADLQLED SNGYQQTVSS DKAQDGTGNI YGIEISGDTV AYQGENVNLL LKKHNKKSFD 420 TNCNEGGQAL VCEATTVPLL APESCIGMKT NIYPPHTSGV EPCQNKFMDE TNDTVHVEPI 480 PANDGNANII QHMTNETQPK QKEPNVESLS ASKKPASSDK AAVDAAKDCG AELSSDSDGY 540 HNEKIDLVAK KDEILSSQHT FGQDLSAMAE LDEQNLCMKC NEAGQLLVCK TTTCSLMVHK 600 NCLSASAQLD AKGNFVCPFC AYSHTISEYL EAKKIASLAR KELAIFISKG IRKEAVDRVH 660 ESSRQERNVL RKSYKSEHIP LTENEENRED HAGEHANEVN NFHFERSQQR APKSVVHSLS 720 LRENENVNNG LAGDVREENE SEMLIAKSLT CGRAGQKERP TDKFFCKKIN VVCANENNVG 780 EEVPQNMTEH NMAGTVEPVC AHNTVKEEIS EDERKKHNIS RYSMKFHMDE VQYKTPPSPK 840 IRRKQIPWTA EEEELIREGV QKFSFSDQQL PWKKILAFGS HVFEKNCRRR TPQDLKDKWK 900 NMCKAHSKLK QKALS

Sequence ? help Back to Top

Protein Sequence Length: 915 aa Download sequence Send to blast

MDSNNNNDEP SEPFSTLPWH WVMEALAGFK EITTSTLQGL IDAAPVRTDN FGENTKELIA  60
MRCLEEIYAS SSSFSSSTLD SRVGLDFSRT CDGVLQEILR EVPLSNLRIS GAQLLKWDVK  120
PFIKYRRADN VKCHLEQLKE SILEGTVPLT DHLKERSGLF QINHARTVCV NDGKCKDQSV  180
KDDGNSAYAE DLGAKESSAS LILGDGNKSS KECLPDNNRL SSRRNMVYSA DENFMSCLNE  240
KQVCINECDD SLRSTKRIKR NASTNFDSKK EKKLSRLGKE VSENLTEKYL PIFENVGHHT  300
EKNNRETLSD GPLQDSHNRC TASNLCQSSS QKEVFHDESG IPFNASLTPM EKTSGSKPWF  360
EHEADLQLED SNGYQQTVSS DKAQDGTGNI YGIEISGDTV AYQGENVNLL LKKHNKKSFD  420
TNCNEGGQAL VCEATTVPLL APESCIGMKT NIYPPHTSGV EPCQNKFMDE TNDTVHVEPI  480
PANDGNANII QHMTNETQPK QKEPNVESLS ASKKPASSDK AAVDAAKDCG AELSSDSDGY  540
HNEKIDLVAK KDEILSSQHT FGQDLSAMAE LDEQNLCMKC NEAGQLLVCK TTTCSLMVHK  600
NCLSASAQLD AKGNFVCPFC AYSHTISEYL EAKKIASLAR KELAIFISKG IRKEAVDRVH  660
ESSRQERNVL RKSYKSEHIP LTENEENRED HAGEHANEVN NFHFERSQQR APKSVVHSLS  720
LRENENVNNG LAGDVREENE SEMLIAKSLT CGRAGQKERP TDKFFCKKIN VVCANENNVG  780
EEVPQNMTEH NMAGTVEPVC AHNTVKEEIS EDERKKHNIS RYSMKFHMDE VQYKTPPSPK  840
IRRKQIPWTA EEEELIREGV QKFSFSDQQL PWKKILAFGS HVFEKNCRRR TPQDLKDKWK  900
NMCKAHSKLK QKALS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004516067.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004516067.1	0.0	uncharacterized protein LOC101508857
Refseq	XP_012567479.1	0.0	uncharacterized protein LOC101508857
TrEMBL	A0A1S3DWD4	0.0	A0A1S3DWD4_CICAR; uncharacterized protein LOC101508857
STRING	XP_004516066.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3872	22	24