PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004515927.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C2H2 | ||||||||
Protein Properties | Length: 295aa MW: 32903.5 Da PI: 8.2346 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.8 | 0.0016 | 113 | 135 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H XP_004515927.1 113 YECKTCNRCFPSFQALGGHRASH 135 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 13.7 | 0.00019 | 194 | 216 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H XP_004515927.1 194 HECSICGSEFSSGQALGGHMRRH 216 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.7E-7 | 112 | 135 | No hit | No description |
PROSITE profile | PS50157 | 10.159 | 113 | 140 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.14 | 113 | 135 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 8.0E-11 | 113 | 137 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 115 | 135 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.7E-7 | 189 | 216 | No hit | No description |
Pfam | PF13912 | 6.8E-12 | 193 | 218 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.764 | 194 | 216 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.02 | 194 | 216 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 196 | 216 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MQVLEELMMV SKDHTQQIIK GKRTKRQRLP SPLRLTMSSS SYNEGTSYKS YNNNNYDNNS 60 TRDVDLATIG SSGQSEEEKE EEDMANCLIL LAQGGHHHNV SNNHNSNNSS YLYECKTCNR 120 CFPSFQALGG HRASHSKPNK VNCNNIIEQK QVITTSFVDD HKYDPTMNTI LSLQAFSTSP 180 ITTTTTTPKK SKVHECSICG SEFSSGQALG GHMRRHRALV NTSTTTTTTT TTSMSLSIGS 240 PKSHHEAKKP RNVLKLDLNL PAPEVDHQRD QSTFSFQPRE NVIAFSNSSL VDCHY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004515927.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004515927.1 | 0.0 | zinc finger protein ZAT5 | ||||
TrEMBL | A0A1S2Z6H5 | 0.0 | A0A1S2Z6H5_CICAR; zinc finger protein ZAT5 | ||||
STRING | XP_004515927.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03510.1 | 8e-43 | C2H2 family protein |