PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004515875.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 351aa    MW: 39766.2 Da    PI: 6.2839
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004515875.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.63.9e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W+ eEde+l + ++++G g+W+++++  g+ R++k+c++rw +yl
   XP_004515875.1 14 KGLWSLEEDEKLFNHITRFGVGCWSSVPKQAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding45.61.6e-1467110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +++ E++l++ +++ lG++ W+ Ia+ ++ gRt++++k++w++
   XP_004515875.1  67 RGMFSQHEEDLIISLHEVLGNR-WAQIAAQLP-GRTDNEIKNFWNS 110
                      788*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.6E-25664IPR009057Homeodomain-like
PROSITE profilePS5129416.441961IPR017930Myb domain
SuperFamilySSF466893.2E-2812108IPR009057Homeodomain-like
SMARTSM007176.7E-111363IPR001005SANT/Myb domain
PfamPF002499.3E-131461IPR001005SANT/Myb domain
CDDcd001679.17E-101761No hitNo description
PROSITE profilePS5129423.48262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-2565116IPR009057Homeodomain-like
SMARTSM007175.5E-1366114IPR001005SANT/Myb domain
PfamPF002496.2E-1367111IPR001005SANT/Myb domain
CDDcd001679.73E-1070109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGRHSCCLKQ KLRKGLWSLE EDEKLFNHIT RFGVGCWSSV PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQHEEDLIIS LHEVLGNRWA QIAAQLPGRT DNEIKNFWNS CLKKKLLKQG  120
IDPTTHKAIT ETCIKEENKS PEATTPIQIP SATSQGSTFL ISDSNYYDNN SIITEASREI  180
FTTKSALDPL FCYDFQSGYN LPLSHYQNQF GVNSSYGFTS MPSLTNSDHG NLSVTEFSDN  240
NSASKISSLF MNEQVKESSS NNSSNMSTIY PSQMRNVMEN NNAGFSWDGD NKLDPLFHFQ  300
QVNGIKSEEF GTSSWEEGQL QTHNSIDFTS YPLTSLSEDL TQANFDVFHH I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27121165108B-MYB
1h8a_C1e-27711620128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004515875.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0529240.0BT052924.1 Medicago truncatula clone MTYFL_FM_FN_FO1G-C-4 unknown mRNA.
GenBankBT1342150.0BT134215.1 Medicago truncatula clone JCVI-FLMt-12F11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004515875.10.0transcription factor MYB7-like
SwissprotQ8LPH61e-76MYB86_ARATH; Transcription factor MYB86
TrEMBLA0A1S2Z6F80.0A0A1S2Z6F8_CICAR; transcription factor MYB7-like
STRINGXP_004515875.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58313353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.31e-80myb domain protein 55