PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004515843.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C3H | ||||||||
Protein Properties | Length: 504aa MW: 55515 Da PI: 5.2778 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.2 | 4.3e-11 | 169 | 191 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+f+++tG Ck+G +CkF+H+ XP_004515843.1 169 EDCSFYMKTGSCKFGFNCKFNHP 191 89********************8 PP | |||||||
2 | zf-CCCH | 29.3 | 1.5e-09 | 215 | 237 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 + +C++++r+G Ck+G CkF+H XP_004515843.1 215 QTECKYYQRSGGCKFGKACKFNH 237 679******************** PP | |||||||
3 | zf-CCCH | 40.4 | 4.8e-13 | 259 | 282 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C++++rtG Ck+G++C+F+H+ XP_004515843.1 259 EKECPYYMRTGSCKFGSNCRFNHP 282 689********************9 PP | |||||||
4 | zf-CCCH | 29.3 | 1.5e-09 | 392 | 418 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+ff++tG Ck+ ++CkF+H++ XP_004515843.1 392 PGEPECSFFLKTGDCKFKSNCKFHHPK 418 5799*********************96 PP | |||||||
5 | zf-CCCH | 35.8 | 1.4e-11 | 439 | 464 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++++r+G+Ck+G+ C+F H++ XP_004515843.1 439 DQSICSHYSRYGICKFGPACRFDHPE 464 6789********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.249 | 165 | 193 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-4 | 165 | 192 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.76E-6 | 166 | 193 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-8 | 169 | 191 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.8E-4 | 171 | 190 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.798 | 212 | 240 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.9E-4 | 212 | 239 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.1E-7 | 215 | 237 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-5 | 216 | 239 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.2E-4 | 218 | 239 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.939 | 256 | 284 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-6 | 256 | 283 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-6 | 257 | 284 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-10 | 259 | 282 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-5 | 262 | 281 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.164 | 391 | 419 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-4 | 391 | 418 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.5E-7 | 393 | 418 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-5 | 396 | 420 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.037 | 437 | 465 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.5E-5 | 437 | 464 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.58E-6 | 438 | 467 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-8 | 439 | 464 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-4 | 441 | 465 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 504 aa Download sequence Send to blast |
MEHSESDSVA VSYSKDPQSG SEVQQPSSPV DHPPPSDLNH AAEDEDALTE ELQNKLDLKS 60 KGEDEGVDET EDKVSNFDDG EQVCDEESVK GEEVVDGDSK GWDTNSWNDN VNEEVDGGRD 120 GYGYGSGYGG GYGDGYGYGD GYGYGDGVEK KEEKRNDGTH QFPLRPEAED CSFYMKTGSC 180 KFGFNCKFNH PIRRKNQAVK EKVREREEPA EKSGQTECKY YQRSGGCKFG KACKFNHTRG 240 FAAPISELNF LGLPIRLGEK ECPYYMRTGS CKFGSNCRFN HPDPTTVVGG DTKSGYGNGG 300 SISLQGVSQQ SVAPWSSSRK LNETPFVPMM ITPTQGLAPQ SSDWNGYKAP VYLSERIVHP 360 SSTYVMNKPT IETNVYMHHH KQISVEEFPE RPGEPECSFF LKTGDCKFKS NCKFHHPKNR 420 VARLPPCNLS DKGLPLRPDQ SICSHYSRYG ICKFGPACRF DHPENSLPLI PGLGQQSYTN 480 SASVQVTGMG GSTGANDVTI QQSV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004515843.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT147874 | 0.0 | BT147874.1 Medicago truncatula clone JCVI-FLMt-22B17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004515843.1 | 0.0 | zinc finger CCCH domain-containing protein 43-like | ||||
Swissprot | Q9STM4 | 1e-136 | C3H43_ARATH; Zinc finger CCCH domain-containing protein 43 | ||||
TrEMBL | A0A1S2Z6B9 | 0.0 | A0A1S2Z6B9_CICAR; zinc finger CCCH domain-containing protein 43-like | ||||
STRING | XP_004515843.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4156 | 33 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 1e-134 | C3H family protein |
Publications ? help Back to Top | |||
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