PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004515699.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 278aa    MW: 31880.5 Da    PI: 6.908
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004515699.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.96.2e-151764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd +l +++ ++G ++W++++ + g+ R +k+c++rw +yl
   XP_004515699.1 17 KGLWSPEEDNKLRNYILKYGHNCWSSVPIKAGLQRNGKSCRLRWINYL 64
                     678*******************************************97 PP
2Myb_DNA-binding47.63.8e-1570115148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg  ++ E++ ++ ++++lG++ W+ Ia+ ++ gRt++++k++w++yl
   XP_004515699.1  70 RGVLSKHEEDTIITLHHMLGNK-WSQIAQQLP-GRTDNEIKNYWHSYL 115
                      677799****************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-211266IPR009057Homeodomain-like
PROSITE profilePS5129417.3281264IPR017930Myb domain
SuperFamilySSF466892.12E-2715111IPR009057Homeodomain-like
SMARTSM007171.5E-111666IPR001005SANT/Myb domain
PfamPF002493.5E-131764IPR001005SANT/Myb domain
CDDcd001672.51E-102064No hitNo description
PROSITE profilePS5129423.86765119IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2367119IPR009057Homeodomain-like
SMARTSM007179.7E-1469117IPR001005SANT/Myb domain
PfamPF002499.1E-1470115IPR001005SANT/Myb domain
CDDcd001679.29E-1074115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0010018Biological Processfar-red light signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGFEIEEKPK PKPKYRKGLW SPEEDNKLRN YILKYGHNCW SSVPIKAGLQ RNGKSCRLRW  60
INYLRPGLKR GVLSKHEEDT IITLHHMLGN KWSQIAQQLP GRTDNEIKNY WHSYLKKKVV  120
ETNQIKYATS SSESIDSLVS TLKNSSQDPN YAVLENIDKS TPKTHSNHSI SHNYNTTNDV  180
CLNSLPKLLF AEWLSLDHVN GGSSINSNDT LVLGNGYDQN SSFQDDVMQI QEGQFCDNYH  240
DSLIQNPANE VYYSQLQMSN QVDENDLVHS MNNDAIYV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23131193108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004515699.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150448e-31AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004515699.10.0transcription factor LAF1-like
SwissprotQ9M0K45e-64LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A1S2Z6080.0A0A1S2Z608_CICAR; transcription factor LAF1-like
STRINGXP_004515699.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38303161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.14e-66myb domain protein 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]