PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004515685.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family TALE
Protein Properties Length: 538aa    MW: 60055.1 Da    PI: 8.1419
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004515685.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.51.2e-093463831954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +++  LAk++gL+ +qV++WF N R +
  XP_004515685.1 346 FEHflHPYPTDTDKIMLAKQTGLSRNQVSNWFINARVR 383
                     554459******************************88 PP
2BELL101.27.6e-33215283472
            BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     e +k k++Ll++l+eV++rY+qy++q+++vi sFe v glg+a+pY+slAl+a+S+hFrcLk+ i++q+
  XP_004515685.1 215 EGRKNKSRLLTMLDEVCRRYRQYYQQIHAVITSFEYVSGLGNAAPYASLALNAMSKHFRCLKNVITDQL 283
                     67889*************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.9E-47155281IPR006563POX domain
PfamPF075263.1E-37160280IPR006563POX domain
PROSITE profilePS5007111.985324387IPR001356Homeobox domain
SMARTSM003891.4E-10327391IPR001356Homeobox domain
CDDcd000869.25E-13327388No hitNo description
SuperFamilySSF466893.38E-17329394IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-28330391IPR009057Homeodomain-like
PfamPF059205.6E-19344383IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MAEEGFEHYH IPQQSRREKL RILSQNQTNF VESSSNSLHP NSLPLPSLYD PSLISSNFMM  60
GFGGVVNSSS SQLNSPIDPF VYQAQNLREF NHGYTNEGGS SSNSEVMLLK SEPLSLSLSS  120
NKNNQNQVNF QRFGSVIYGG GCEVSRNTVP LGPFTGYASI LKGSRFLKPA QQLLDEICDV  180
GVSGICGEKI AVDDSLMDSN GQDSGIVNGV DDGNEGRKNK SRLLTMLDEV CRRYRQYYQQ  240
IHAVITSFEY VSGLGNAAPY ASLALNAMSK HFRCLKNVIT DQLRFISKSN FQISNSRKDE  300
SPRFRNSDAA PYSQRPGFLE HVQPPVWRPQ RGLPERAVSV LRAWLFEHFL HPYPTDTDKI  360
MLAKQTGLSR NQVSNWFINA RVRLWKPMVE EIHMLESQQT QKEPQRDENL STSTDKFQLP  420
SNNIIAQNPC NSTDKFQSVA YKRTRNELSN MSVLNQQVGS NGVSMGNNVA TSNNGVSLTL  480
GLHQNHGIGL SEPFNMSAAQ RFGLALQTDS YVTSNFQSQN RQFGRDLIGG QLLHDFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A9e-16333391563Homeobox protein Meis2
3k2a_B9e-16333391563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004515685.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004515685.10.0BEL1-like homeodomain protein 9
SwissprotQ9LZM81e-124BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLA0A1S2Z5Z70.0A0A1S2Z5Z7_CICAR; BEL1-like homeodomain protein 9
STRINGXP_004515685.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28103373
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-118TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]