PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004515651.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bZIP

Protein Properties

Length: 358aa MW: 40503.1 Da PI: 6.6109

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004515651.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.1	6.8e-12	63	93	3	33
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLee 33 ++k+ rr+++NReAAr+sR+RKka++++Le+ XP_004515651.1 63 DSKVLRRLAQNREAARKSRLRKKAYVQQLET 93 6899*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.8E-9	57	112	No hit	No description
SMART	SM00338	9.0E-9	61	121	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.565	63	98	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.0E-9	64	95	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.8E-7	65	101	No hit	No description
PROSITE pattern	PS00036	0	68	83	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	7.8E-27	155	228	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MDIYEPFQQV SMWGDSFKVE GGLNSIASPM LLVNTSMENK SEFIPHEPRD SSGADQETTN 60 KDDSKVLRRL AQNREAARKS RLRKKAYVQQ LETSRLKLMQ LEIEIGRARK QLQGMYTGNA 120 LDTSFMGSSE TINPGVVAFE IEYGNWVEEQ HRWNEELRNA FQTNASEVQL HLVVQSVLNH 180 YSDLFRMKAD AAKADVLYLI SGVWKTSLER LFLWIGGSRP SQLLNLILPQ LEPLTDQQIA 240 SINKLRLSSQ QAEDALSQGL DKLQQSLVQD MAVDPLTAAN HGFQMAIALE KFEGLEGFVS 300 QADHLRQQTL IHMSRILSTH QAARGLLALG EYFHRLRTLC SLWTSRPCDS IMSPKITP

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MDIYEPFQQV SMWGDSFKVE GGLNSIASPM LLVNTSMENK SEFIPHEPRD SSGADQETTN  60
KDDSKVLRRL AQNREAARKS RLRKKAYVQQ LETSRLKLMQ LEIEIGRARK QLQGMYTGNA  120
LDTSFMGSSE TINPGVVAFE IEYGNWVEEQ HRWNEELRNA FQTNASEVQL HLVVQSVLNH  180
YSDLFRMKAD AAKADVLYLI SGVWKTSLER LFLWIGGSRP SQLLNLILPQ LEPLTDQQIA  240
SINKLRLSSQ QAEDALSQGL DKLQQSLVQD MAVDPLTAAN HGFQMAIALE KFEGLEGFVS  300
QADHLRQQTL IHMSRILSTH QAARGLLALG EYFHRLRTLC SLWTSRPCDS IMSPKITP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. {ECO:0000269\|PubMed:12897257}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004515651.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004515651.1	0.0	transcription factor TGA3-like isoform X1
Refseq	XP_004515652.1	0.0	transcription factor TGA3-like isoform X1
Swissprot	Q39234	1e-128	TGA3_ARATH; Transcription factor TGA3
TrEMBL	A0A1S2Z5W7	0.0	A0A1S2Z5W7_CICAR; transcription factor TGA3-like isoform X1
STRING	XP_004515651.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1096	34	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22070.1	1e-120	TGA1A-related gene 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Gangadharan A,Sreerekha MV,Whitehill J,Ham JH,Mackey D The Pseudomonas syringae pv. tomato type III effector HopM1 suppresses Arabidopsis defenses independent of suppressing salicylic acid signaling and of targeting AtMIN7. PLoS ONE, 2013. 8(12): p. e82032 [PMID:24324742] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Fang H, et al. The Ca2+ /calmodulin2-binding transcription factor TGA3 elevates LCD expression and H2 S production to bolster Cr6+ tolerance in Arabidopsis. Plant J., 2017. 91(6): p. 1038-1050 [PMID:28670772] Sarkar S, et al. Interaction of Arabidopsis TGA3 and WRKY53 transcription factors on Cestrum yellow leaf curling virus (CmYLCV) promoter mediates salicylic acid-dependent gene expression in planta. Planta, 2018. 247(1): p. 181-199 [PMID:28913593]