PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004515618.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family Dof
Protein Properties Length: 349aa    MW: 37211 Da    PI: 9.5431
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004515618.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.99.2e-3873132362
          zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     e a+kcprCdstntkfCy+nnyslsqPr+fCk+CrryWt+GGalr vPvGgg+r+nk+++
  XP_004515618.1  73 EPAQKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRTK 132
                     56899****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-3256125IPR003851Zinc finger, Dof-type
PfamPF027018.4E-3275130IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.12476130IPR003851Zinc finger, Dof-type
PROSITE patternPS01361078114IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MVYTSLPPYM DPANWHQQQP NHQVANNSFN TPLLIPSPQP QPSNLTPSQS HGGSIRPGSM  60
ADRARMANIP MQEPAQKCPR CDSTNTKFCY FNNYSLSQPR HFCKTCRRYW TRGGALRSVP  120
VGGGCRRNKR TKSSNNNTSK SPVSSDRQTS SANNNSPAVL SSQTPPPMRF MAPLHQLGDH  180
IGEIGLNYGF SSPMGGVGDL NFHIGNSLGG ASGGVGSGGV TSASGGSASI LPVGGFEQWR  240
MPQTHQFPFL SGLEASSSHG LLYPFEGGGG GGNDQAHVYG GVPKVLSTSS VKMEENQSRQ  300
FLGMINSNNN NPNSEQYWNA SAGGATSAWA DLSAFNSSNS TTTNSNYRS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00295DAPTransfer from AT2G37590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004515618.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004515618.10.0dof zinc finger protein DOF2.4-like
TrEMBLA0A1S2Z5V90.0A0A1S2Z5V9_CICAR; dof zinc finger protein DOF2.4-like
STRINGXP_004515618.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.12e-41DNA binding with one finger 2.4