PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004515594.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bHLH

Protein Properties

Length: 400aa MW: 44791.6 Da PI: 5.9057

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004515594.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36	1.3e-11	328	373	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L l Pk+ +k + a++L +AveYIk+Lq XP_004515594.1 328 SIAERVRRTRISERIKKLEGLFPKL----DKQTNTADMLDLAVEYIKDLQ 373 689*******************9....788***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.446	322	372	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.32E-14	325	388	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.47E-9	326	377	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.8E-13	327	386	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.8E-9	328	378	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-8	328	373	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MSVMYEELRR NQEMDSTSIG HSKQQHSGVL MRYSSAPSSF FTSLIDNNNN THSYANNEES 60 FTTSNSEMDT MLSKLISTNN GWNNSSEPLQ EFGVKVVKQE ESESNGYSYG GSELTYQDLS 120 NGSSNSFYGS FVGVNSMDSE NCTQSKIGVR NCSNLIRQKS SPAGFFSSEN GLATLRELEI 180 FKANEISNAQ TRGFHGTLNF SSTCLKRMPQ IAENGIQSID SNCDQGRDII NENGSTKCHM 240 PSFNNEFWDN SSFNAQKVES EDEIMFSTTN GLESQEGDFC YQNLGLTHQL SLPSSSTKMT 300 SIEKFLQIQG SAPCKIRAKR GFATHPRSIA ERVRRTRISE RIKKLEGLFP KLDKQTNTAD 360 MLDLAVEYIK DLQGQVQILT DCREKCKCTS NEKLYTKHCS

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MSVMYEELRR NQEMDSTSIG HSKQQHSGVL MRYSSAPSSF FTSLIDNNNN THSYANNEES  60
FTTSNSEMDT MLSKLISTNN GWNNSSEPLQ EFGVKVVKQE ESESNGYSYG GSELTYQDLS  120
NGSSNSFYGS FVGVNSMDSE NCTQSKIGVR NCSNLIRQKS SPAGFFSSEN GLATLRELEI  180
FKANEISNAQ TRGFHGTLNF SSTCLKRMPQ IAENGIQSID SNCDQGRDII NENGSTKCHM  240
PSFNNEFWDN SSFNAQKVES EDEIMFSTTN GLESQEGDFC YQNLGLTHQL SLPSSSTKMT  300
SIEKFLQIQG SAPCKIRAKR GFATHPRSIA ERVRRTRISE RIKKLEGLFP KLDKQTNTAD  360
MLDLAVEYIK DLQGQVQILT DCREKCKCTS NEKLYTKHCS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004515594.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004515594.1	0.0	transcription factor bHLH130-like
TrEMBL	A0A1S2Z5T1	0.0	A0A1S2Z5T1_CICAR; transcription factor bHLH130-like
STRING	XP_004515594.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4005	33	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	5e-54	bHLH family protein