PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004515539.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | bHLH | ||||||||
Protein Properties | Length: 362aa MW: 40569.7 Da PI: 4.8509 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.2 | 3e-13 | 175 | 221 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L +P + K +Ka+iL+ A++Y+k+Lq XP_004515539.1 175 DHIMAERKRRQELTERFIALSATIPGL-----SKTDKASILRAAIDYVKQLQ 221 699***********************8.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.53E-12 | 169 | 224 | No hit | No description |
SuperFamily | SSF47459 | 3.4E-17 | 171 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.834 | 171 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.6E-11 | 175 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.7E-17 | 175 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.2E-15 | 177 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MEESWENFHL PTDQLDCGDD YFIDNCDNIN TDGDDFLREI LLQTPQTFSS ESEISEYSFQ 60 QVQNDSVTVN VNGVVEVVGN MVKSNSSNSI VSQKQEDLNP KKVPPRRCSL PKTYILSFDN 120 STMIPATPEP CLDFEGKRDS PLVSNKRSQE TKNGERKTNE RNGVKRPRSG SQTVDHIMAE 180 RKRRQELTER FIALSATIPG LSKTDKASIL RAAIDYVKQL QERVNELEKE DKNVGVASVM 240 VLKKTNLCGN NDNEDTNSCE TNCDDDCNNI LPEIEARVMG KEVLIEIHCK KQNGIELKLL 300 NHLENLQLFV TGSSVLPFGK SAISITIIGQ MSEGYKVTGN DLVKSIRKVL LKPQMVCGSD 360 PY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 179 | 184 | ERKRRQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004515539.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004515539.1 | 0.0 | transcription factor bHLH18-like | ||||
TrEMBL | A0A1S2Z5Q3 | 0.0 | A0A1S2Z5Q3_CICAR; transcription factor bHLH18-like | ||||
STRING | XP_004515539.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13110 | 12 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 1e-41 | bHLH family protein |