PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004515466.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GRAS
Protein Properties Length: 727aa    MW: 80378 Da    PI: 5.4324
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004515466.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS326.84.2e-1003637261374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+++L+++Ae++++g+ ela+ +Larl++++sp g+p+qR+ ++f+eAL+  l+++ ++  +  ++ + s++    ++ a+k fse+sP+l+f++
  XP_004515466.1 363 LIDQLFKAAEMIDAGNPELAHGILARLNHQVSPIGKPFQRASFHFKEALQLFLQSNNNNSNSNNSSLSFSPTGLLLKIGAYKSFSEISPVLQFAN 457
                     5789***************************************************888888888888888889********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +t Nqa+leaveg +r+HiiDfdi+ G+QW +++q+La R++g+p l+iT+++sp+++++ el+ t+e+L+++A+e++++fe ++l+ +++++ +
  XP_004515466.1 458 FTSNQALLEAVEGFDRIHIIDFDIGFGGQWSSFMQELALRNGGAPALKITAFVSPSHHDEIELSFTHENLKQYASEINMSFELEILTFESMNSAS 552
                     *************************************************************************************9888887774 PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerik 284
                      +   ++  Ea++Vnl +  ++ +      +s+ + vL++vk+l Pk+vv  ++ +d+++++F ++++ al+ ys+l++sl ++++  + +  ++
  XP_004515466.1 553 -WPQPLRDCEAVVVNLPIGSFSNY------PSYLPLVLRFVKQLMPKIVVTLDRSCDRTDAPFPQHLIFALQSYSSLLESLdAVSVNVHPDVLQM 640
                     .4446799**********888877......677788*********************************************667777777999** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +E+ +l+++i+++v+ + ++    + +   W++ + ++GF+p+++s+++++qa++l+++++++g++ve+++ slvl+W+++ L+svS Wr
  XP_004515466.1 641 IEKYYLQPAIEKLVSGRLRS----QDRTLPWKNLMLSSGFSPMTFSNFTESQAECLVQRIPGRGFHVEKKQSSLVLCWQRKDLISVSTWR 726
                     **************998887....666679***********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.402337706IPR005202Transcription factor GRAS
PfamPF035141.5E-97363726IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MNEEYIGKGV LDFVGGGVSN SNSNSNSDSF LSPQQQEQFL LQRWRREENC CYAAEGIDPS  60
SLVVFDLKKT TPTSSSTLSS SHGSAAGGGG STDSAAAAKD YNNNNNNISQ VEGGCGGMGM  120
EDWESVLSES PSQDHSILKL IMEDIEDASM GLSKLLQVGN GNGSGNGSHS HSQDVVEFNG  180
FSFMDQQSSV VLDPIPSTNV NNNFVTSIET CSDFPFSRLN QNPMFHSSAS NSNNPQSLFQ  240
SMETQAVNNN PHFVLNQNQA VSQFMPNNNN PGLVFPFTYS QLQENQQQVQ PPAKRLNCGT  300
NYQVPKTPFL DSGQDMFLRR QQQQLQLLPH HLQHRPSSGV MAPKQKMGGG GEDVAIHQLQ  360
QALIDQLFKA AEMIDAGNPE LAHGILARLN HQVSPIGKPF QRASFHFKEA LQLFLQSNNN  420
NSNSNNSSLS FSPTGLLLKI GAYKSFSEIS PVLQFANFTS NQALLEAVEG FDRIHIIDFD  480
IGFGGQWSSF MQELALRNGG APALKITAFV SPSHHDEIEL SFTHENLKQY ASEINMSFEL  540
EILTFESMNS ASWPQPLRDC EAVVVNLPIG SFSNYPSYLP LVLRFVKQLM PKIVVTLDRS  600
CDRTDAPFPQ HLIFALQSYS SLLESLDAVS VNVHPDVLQM IEKYYLQPAI EKLVSGRLRS  660
QDRTLPWKNL MLSSGFSPMT FSNFTESQAE CLVQRIPGRG FHVEKKQSSL VLCWQRKDLI  720
SVSTWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-3437672616375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004515466.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004515466.10.0scarecrow-like protein 27 isoform X2
SwissprotO813161e-135SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A1S2Z5L00.0A0A1S2Z5L0_CICAR; scarecrow-like protein 27 isoform X2
STRINGXP_004515465.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-117GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]