PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004515302.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | G2-like | ||||||||
Protein Properties | Length: 348aa MW: 39515.7 Da PI: 7.2832 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97.4 | 1e-30 | 15 | 69 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt++LH+rF+ea +qLGG+ekAtPk +++lm+++gLtl+h+kSHLQkYRl XP_004515302.1 15 KPRLKWTHDLHQRFIEATNQLGGAEKATPKGLMRLMGIPGLTLYHLKSHLQKYRL 69 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.8E-29 | 13 | 71 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.58E-15 | 14 | 70 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.1E-21 | 15 | 70 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.9E-6 | 17 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 6.5E-20 | 111 | 156 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MKNQSKHFFL SSNAKPRLKW THDLHQRFIE ATNQLGGAEK ATPKGLMRLM GIPGLTLYHL 60 KSHLQKYRLG KSQQLEKYSD NKQEDYTETK SFDDHCSREI STGENQINEN MHIADALEMQ 120 MEVEKKLYEQ IEVEKHLQLR IEAQGKYLQS VLSKALRALS AYNSSPIGIK LKKSELSQLV 180 IMINNSCPNS PISEVTGTGE LSLNSEERKM DRGTICLLES SLTSCESSER KEEKHSIEYL 240 ANLSTISLEL PQMKMQSEEK SMSSRVSESI SMSDNSCNEA NGRKRNAATK SDGSHVEHCS 300 YKKRCGNKMK KEKLSEMFDL NSQCENEMDS TGSKTLLDLN CSLNLWEP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-19 | 14 | 71 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-19 | 14 | 71 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-19 | 14 | 71 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-19 | 14 | 71 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-19 | 14 | 71 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-19 | 14 | 71 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-19 | 14 | 71 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-19 | 14 | 71 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004515302.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004515302.1 | 0.0 | myb family transcription factor PHL8-like isoform X1 | ||||
Swissprot | F4I274 | 4e-67 | PHL8_ARATH; Myb family transcription factor PHL8 | ||||
TrEMBL | A0A1S2Z591 | 0.0 | A0A1S2Z591_CICAR; myb family transcription factor PHL8-like isoform X1 | ||||
STRING | XP_004515302.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5218 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69580.1 | 4e-69 | G2-like family protein |
Publications ? help Back to Top | |||
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